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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038986 ID=TCONS_00038986|Name=TCONS_00038986|organism=Clytia hemisphaerica|type=transcript|length=1761bp
ttccttttggagaaaatttttccatACTGTACTAAAATCTAAAGATACTA
AAATCTTCGTATAAAGTGCACCCACTATGAAGAAGTGGTATtctagaaaa
aattaagaataataaaATTGCTAGTTTTAGTACTAAAATGTAGTAAGATT
TCTCAGGTCTTCCCTTTTATACAACCGTTTCGGTATTTTGGTACCAAATG
GCACTAAAACACCCTTGTCTCATAGCACCGAAGGAGCCTCTTCACAGAGT
GGTGGGGAATGGTTTTGGAATTTCCCAGAGTGAGAATGAAGATTTCAATC
GAAATCTCAACGGGGATAGAAGTTCTATTGTTCTCAGGTTCTCAAATCaa
gtgggaatggttttggaaTGCAATTTTCGAGTGAAGCTGGGGTTCCAGTG
GGTCTTTGACAAAGGGTGTCCAAAAGGATTTCCATGTTTTCATGACTCGG
TTGGCACAGAACGTCATGATAACGTCCATCTGACGTCCCTAACGTTCAAA
TAACATTAAAACAACGTGATGTGCCAATTGGGTACTGTTCCTATCTGATT
AAATTCTGTTCTCAAAAATGAACTTACAAATGATAAAACGATCAAAGCCT
AATCTTTCTGATTAAAATGTTTTGTGGCACTGAGTTTTATTCGGTATACA
ATCTTTGGTATATTTGATTCACTTCAAAATTCCAAAAACAATTGCGGATT
GTTCATCACCGAAATAAAAATCTTCTGAAACATTACCAACACGCCAATAT
TCATAAGAAGTGTCctgattcttttgtttaaacTTTAAACATTTCTCAAA
ATCATTTGTATGGAGAAGAAAGAAGGTTGCAGTTGACCATGCAATTTTCA
AATCTTCAACTAGAAAATCCGCAGGTTCTTCTTCGTAACTGTTGTCTTTT
CTGTTCACGAAATCCAGACGATTACGCCCTTATTGAATTCCTTTCTCATG
AACAAATATTTATCCGTcttgaacatttttttattcccCATCATTGCGGA
AATTGCTTTGTACCAGTGACCATAAGAAGGGTACAAAAGTGAAGATTTAT
TTCCTTCGTGAAAATATTCTGCTCCCCAAACCAAACAATCGATCGTCGTC
ATATTTTGCCTTTGAATGatccttttcaaattttcaatttcaccgTTCAA
ATGTTGGACAGTTGCTTCTTTCTCTGTCATTTCTTTCTCCATATCGTTCA
ATTTTGTCTCCGTTtgtaagattttgattttgtgttcgttttccaaatct
ttcactttcattttccattcattttctTTAACTACTATTTCCTTTTCTTG
TTCTTTCTTGTACAGAACCATTTCGTGCTCTTTGGCTACTAATTGTTTCT
CCTTTTCGACCAAGTTATTTCGCAGTTCGTCTTTCTGTTTTTGGAGTTGT
TGATCGGCTTGAACTTGACTTGATTGAGATTCACgagaattttttaattt
gaacatCTCAAATTGATGAGATaaagtttgattttctttttctagctgca
tgattttcaacgttttctcGTTTTCAGATTCCAGTTGTTGAATTTTAAAT
TCCATTTTGAGTTTCTCAATctctttttgatgttcttctttgAGTTTGGT
AATTTGCTGATCGTCAGCAACTTTGTGCACATTCCTCCCACTAGCGCTGT
GAGCCAAATTCCTTTTGTCAGAATAATCAGAATCCATTctttaatttata
atttaacTATTCAATTAATTTAAGAAGAAATCACAAAATATGAAGAAGAT
CTTAGCTTTCC Run BLAST on NCBI protein sequence of TCONS_00038986-protein >TCONS_00038986-protein ID=TCONS_00038986-protein|Name=TCONS_00038986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MDSDYSDKRNLAHSASGRNVHKVADDQQITKLKEEHQKEIEKLKMEFKIQ
QLESENEKTLKIMQLEKENQTLSHQFEMFKLKNSRESQSSQVQADQQLQK
QKDELRNNLVEKEKQLVAKEHEMVLYKKEQEKEIVVKENEWKMKVKDLEN
EHKIKILQTETKLNDMEKEMTEKEATVQHLNGEIENLKRIIQRQNMTTID
CLVWGAEYFHEGNKSSLLYPSYGHWYKAISAMMGNKKMFKTDKYLFMRKE
FNKGVIVWIS Run BLAST on NCBI transcript from alignment at sc0001982:8244..10004 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038986 ID=TCONS_00038986|Name=TCONS_00038986|organism=Clytia hemisphaerica|type=transcript|length=1761bp|location=Sequence derived from alignment at sc0001982:8244..10004 (Clytia hemisphaerica)
GGAAAGCTAAGATCTTCTTCATATTTTGTGATTTCTTCTTAAATTAATTG
AATAgttaaattataaattaaagAATGGATTCTGATTATTCTGACAAAAG
GAATTTGGCTCACAGCGCTAGTGGGAGGAATGTGCACAAAGTTGCTGACG
ATCAGCAAATTACCAAACTcaaagaagaacatcaaaaagagATTGAGAAA
CTCAAAATGGAATTTAAAATTCAACAACTGGAATCTGAAAACgagaaaac
gttgaaaatcatgcagctagaaaaagaaaatcaaactttATCTCATCAAT
TTGAGatgttcaaattaaaaaattctcGTGAATCTCAATCAAGTCAAGTT
CAAGCCGATCAACAACTCCAAAAACAGAAAGACGAACTGCGAAATAACTT
GGTCGAAAAGGAGAAACAATTAGTAGCCAAAGAGCACGAAATGGTTCTGT
ACAAGAAAGAACAAGAAAAGGAAATAGTAGTTAAagaaaatgaatggaaa
atgaaagtgaaagatttggaaaacgaacacaaaatcaaaatcttacaAAC
GGAGACAAAATTGAACGATATGGAGAAAGAAATGACAGAGAAAGAAGCAA
CTGTCCAACATTTGAAcggtgaaattgaaaatttgaaaaggatCATTCAA
AGGCAAAATATGACGACGATCGATTGTTTGGTTTGGGGAGCAGAATATTT
TCACGAAGGAAATAAATCTTCACTTTTGTACCCTTCTTATGGTCACTGGT
ACAAAGCAATTTCCGCAATGATGgggaataaaaaaatgttcaagACGGAT
AAATATTTGTTCATGAGAAAGGAATTCAATAAGGGCGTAATCGTCTGGAT
TTCGTGAACAGAAAAGACAACAGTTACGAAGAAGAACCTGCGGATTTTCT
AGTTGAAGATTTGAAAATTGCATGGTCAACTGCAACCTTCTTTCTTCTCC
ATACAAATGATTTTGAGAAATGTTTAAAgtttaaacaaaagaatcagGAC
ACTTCTTATGAATATTGGCGTGTTGGTAATGTTTCAGAAGATTTTTATTT
CGGTGATGAACAATCCGCAATTGTTTTTGGAATTTTGAAGTGAATCAAAT
ATACCAAAGATTGTATACCGAATAAAACTCAGTGCCACAAAACATTTTAA
TCAGAAAGATTAGGCTTTGATCGTTTTATCATTTGTAAGTTCATTTTTGA
GAACAGAATTTAATCAGATAGGAACAGTACCCAATTGGCACATCACGTTG
TTTTAATGTTATTTGAACGTTAGGGACGTCAGATGGACGTTATCATGACG
TTCTGTGCCAACCGAGTCATGAAAACATGGAAATCCTTTTGGACACCCTT
TGTCAAAGACCCACTGGAACCCCAGCTTCACTCGAAAATTGCAttccaaa
accattcccacttGATTTGAGAACCTGAGAACAATAGAACTTCTATCCCC
GTTGAGATTTCGATTGAAATCTTCATTCTCACTCTGGGAAATTCCAAAAC
CATTCCCCACCACTCTGTGAAGAGGCTCCTTCGGTGCTATGAGACAAGGG
TGTTTTAGTGCCATTTGGTACCAAAATACCGAAACGGTTGTATAAAAGGG
AAGACCTGAGAAATCTTACTACATTTTAGTACTAAAACTAGCAATtttat
tattcttaattttttctagaATACCACTTCTTCATAGTGGGTGCACTTTA
TACGAAGATTTTAGTATCTTTAGATTTTAGTACAGTatggaaaaattttc
tccaaaaggaa Coding sequence (CDS) from alignment at sc0001982:8244..10004 >TCONS_00038986 ID=TCONS_00038986|Name=TCONS_00038986|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at sc0001982:8244..10004 (Clytia hemisphaerica)
ATGGATTCTGATTATTCTGACAAAAGGAATTTGGCTCACAGCGCTAGTGG
GAGGAATGTGCACAAAGTTGCTGACGATCAGCAAATTACCAAACTcaaag
aagaacatcaaaaagagATTGAGAAACTCAAAATGGAATTTAAAATTCAA
CAACTGGAATCTGAAAACgagaaaacgttgaaaatcatgcagctagaaaa
agaaaatcaaactttATCTCATCAATTTGAGatgttcaaattaaaaaatt
ctcGTGAATCTCAATCAAGTCAAGTTCAAGCCGATCAACAACTCCAAAAA
CAGAAAGACGAACTGCGAAATAACTTGGTCGAAAAGGAGAAACAATTAGT
AGCCAAAGAGCACGAAATGGTTCTGTACAAGAAAGAACAAGAAAAGGAAA
TAGTAGTTAAagaaaatgaatggaaaatgaaagtgaaagatttggaaaac
gaacacaaaatcaaaatcttacaAACGGAGACAAAATTGAACGATATGGA
GAAAGAAATGACAGAGAAAGAAGCAACTGTCCAACATTTGAAcggtgaaa
ttgaaaatttgaaaaggatCATTCAAAGGCAAAATATGACGACGATCGAT
TGTTTGGTTTGGGGAGCAGAATATTTTCACGAAGGAAATAAATCTTCACT
TTTGTACCCTTCTTATGGTCACTGGTACAAAGCAATTTCCGCAATGATGg
ggaataaaaaaatgttcaagACGGATAAATATTTGTTCATGAGAAAGGAA
TTCAATAAGGGCGTAATCGTCTGGATTTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038986-exon-sc0001982-1491911889:8244..10004 | TCONS_00038986-exon-sc0001982-1491911889:8244..10004 | Clytia hemisphaerica | exon |
| TCONS_00038986-exon-sc0001982-1510915933:8244..10004 | TCONS_00038986-exon-sc0001982-1510915933:8244..10004 | Clytia hemisphaerica | exon |
| TCONS_00038986-exon-sc0001982-1575043694:8244..10004 | TCONS_00038986-exon-sc0001982-1575043694:8244..10004 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001982 | supercontig | sc0001982:8244..10004 . |
Blast
The following BLAST results are available for this feature:
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