|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038983 ID=TCONS_00038983|Name=TCONS_00038983|organism=Clytia hemisphaerica|type=transcript|length=1100bp
GTTGTATTTATTTTTCGCGTCTTTTAACTTGCCGCCATTTGCTATAATTG
TTGACTTCgctattttgtgaaattttgatTAAATATATTATactcaaaac
aatggaattttatgaaataaaataaattcacaattttctaatttctttGA
TCATTCCGAGTGATTTCTCTGTTTTCCTCGCTACAAAGCTTTATTATATT
TAGAATAATTCGATAAAAATGAACATCGCGTTGAAATTCAAACATGGGGG
AAAGGAAATTGGTTTTGTTATTGTCAAGGAAGAAGTATTTTATGGCAACC
TTGATGTTTTAAGGCATGAGATGAATTCACAAATTTCGGAACTGCTACCT
AAAGAATTCTTTTTCACTATAAAtaaaatgccagttggtctgaAACAAGA
AAGTTTCCTAAATACTCAGATGGTTTCAAAACATCACGATCAAAAACTAT
TTGACCTTGAAACCTACTGCCTTGATATCAAAGGAAATAAAGAGGAGAAT
CTTGATGTGTTCTCTTCTACCATAACATCCAGTCTTTCTTCGATTTCTAC
GACACCAGTCCTCGAGTCGACAAACATAAATCAATCTGATCAAAATGAAG
ATGCCACTTTTGAAAAAGATATATCTGGCGATGAAAATATTTGcacgaca
aaaagttttttggaagTCTTAGGGCAGAAGCGAAAAAACGACGGATACAA
CGATAGGACAAAAACGgcgaaaaaaactaaaataaacgaATTTTTTACAT
CGCCTTCTCCCAACTCCTccaaaaaacaaacttttttatcaCAGAATAAG
CAGTCATCTGCATCAACTTTCAAATTGAAAGgcataaaattttttgacac
aAAAGAGCTTAGTGATAATAATGTTAGTTTTATCGAAATTCAACGGCGTA
GGTTTTGGAACAAAAAGGCAACTGCCATAATAAACACTCCCAAATATCAC
AATTGGTCGAAACACGCCATAACAGGGTTGATCAACTCGTCGTGGACTCT
AGAGAAATGTTCTCACTTGGAACAAAGTgtgaaagaaattaaaattaaaa
tcaatgaaGAGCAGAGGAAAGATTTATCCTTTAAAAACATTGATAAAAAT Run BLAST on NCBI protein sequence of TCONS_00038983-protein >TCONS_00038983-protein ID=TCONS_00038983-protein|Name=TCONS_00038983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MNIALKFKHGGKEIGFVIVKEEVFYGNLDVLRHEMNSQISELLPKEFFFT
INKMPVGLKQESFLNTQMVSKHHDQKLFDLETYCLDIKGNKEENLDVFSS
TITSSLSSISTTPVLESTNINQSDQNEDATFEKDISGDENICTTKSFLEV
LGQKRKNDGYNDRTKTAKKTKINEFFTSPSPNSSKKQTFLSQNKQSSAST
FKLKGIKFFDTKELSDNNVSFIEIQRRRFWNKKATAIINTPKYHNWSKHA
ITGLINSSWTLEKCSHLEQSVKEIKIKINEEQRKDLSFKNIDKN Run BLAST on NCBI transcript from alignment at sc0001981:6588..7687 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038983 ID=TCONS_00038983|Name=TCONS_00038983|organism=Clytia hemisphaerica|type=transcript|length=1100bp|location=Sequence derived from alignment at sc0001981:6588..7687 (Clytia hemisphaerica)
ATTTTTATCAATGTTTTTAAAGGATAAATCTTTCCTCTGCTCttcattga
ttttaattttaatttctttcacACTTTGTTCCAAGTGAGAACATTTCTCT
AGAGTCCACGACGAGTTGATCAACCCTGTTATGGCGTGTTTCGACCAATT
GTGATATTTGGGAGTGTTTATTATGGCAGTTGCCTTTTTGTTCCAAAACC
TACGCCGTTGAATTTCGATAAAACTAACATTATTATCACTAAGCTCTTTt
gtgtcaaaaaattttatgcCTTTCAATTTGAAAGTTGATGCAGATGACTG
CTTATTCTGtgataaaaaagtttgttttttggAGGAGTTGGGAGAAGGCG
ATGTAAAAAATtcgtttattttagtttttttcgcCGTTTTTGTCCTATCG
TTGTATCCGTCGTTTTTTCGCTTCTGCCCTAAGActtccaaaaaactttt
tgtcgtgCAAATATTTTCATCGCCAGATATATCTTTTTCAAAAGTGGCAT
CTTCATTTTGATCAGATTGATTTATGTTTGTCGACTCGAGGACTGGTGTC
GTAGAAATCGAAGAAAGACTGGATGTTATGGTAGAAGAGAACACATCAAG
ATTCTCCTCTTTATTTCCTTTGATATCAAGGCAGTAGGTTTCAAGGTCAA
ATAGTTTTTGATCGTGATGTTTTGAAACCATCTGAGTATTTAGGAAACTT
TCTTGTTtcagaccaactggcattttaTTTATAGTGAAAAAGAATTCTTT
AGGTAGCAGTTCCGAAATTTGTGAATTCATCTCATGCCTTAAAACATCAA
GGTTGCCATAAAATACTTCTTCCTTGACAATAACAAAACCAATTTCCTTT
CCCCCATGTTTGAATTTCAACGCGATGTTCATTTTTATCGAATTATTCTA
AATATAATAAAGCTTTGTAGCGAGGAAAACAGAGAAATCACTCGGAATGA
TCaaagaaattagaaaattgtgaatttattttatttcataaaattccatt
gttttgagtATAATATATTTAatcaaaatttcacaaaatagcGAAGTCAA
CAATTATAGCAAATGGCGGCAAGTTAAAAGACGCGAAAAATAAATACAAC
Coding sequence (CDS) from alignment at sc0001981:6588..7687 >TCONS_00038983 ID=TCONS_00038983|Name=TCONS_00038983|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0001981:6588..7687 (Clytia hemisphaerica)
ATTTTTATCAATGTTTTTAAAGGATAAATCTTTCCTCTGCTCttcattga
ttttaattttaatttctttcacACTTTGTTCCAAGTGAGAACATTTCTCT
AGAGTCCACGACGAGTTGATCAACCCTGTTATGGCGTGTTTCGACCAATT
GTGATATTTGGGAGTGTTTATTATGGCAGTTGCCTTTTTGTTCCAAAACC
TACGCCGTTGAATTTCGATAAAACTAACATTATTATCACTAAGCTCTTTt
gtgtcaaaaaattttatgcCTTTCAATTTGAAAGTTGATGCAGATGACTG
CTTATTCTGtgataaaaaagtttgttttttggAGGAGTTGGGAGAAGGCG
ATGTAAAAAATtcgtttattttagtttttttcgcCGTTTTTGTCCTATCG
TTGTATCCGTCGTTTTTTCGCTTCTGCCCTAAGActtccaaaaaactttt
tgtcgtgCAAATATTTTCATCGCCAGATATATCTTTTTCAAAAGTGGCAT
CTTCATTTTGATCAGATTGATTTATGTTTGTCGACTCGAGGACTGGTGTC
GTAGAAATCGAAGAAAGACTGGATGTTATGGTAGAAGAGAACACATCAAG
ATTCTCCTCTTTATTTCCTTTGATATCAAGGCAGTAGGTTTCAAGGTCAA
ATAGTTTTTGATCGTGATGTTTTGAAACCATCTGAGTATTTAGGAAACTT
TCTTGTTtcagaccaactggcattttaTTTATAGTGAAAAAGAATTCTTT
AGGTAGCAGTTCCGAAATTTGTGAATTCATCTCATGCCTTAAAACATCAA
GGTTGCCATAAAATACTTCTTCCTTGACAATAACAAAACCAATTTCCTTT
CCCCCATGTTTGAATTTCAACGCGATGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038983-exon-sc0001981-1491911889:6588..7687 | TCONS_00038983-exon-sc0001981-1491911889:6588..7687 | Clytia hemisphaerica | exon |
| TCONS_00038983-exon-sc0001981-1510915933:6588..7687 | TCONS_00038983-exon-sc0001981-1510915933:6588..7687 | Clytia hemisphaerica | exon |
| TCONS_00038983-exon-sc0001981-1575043694:6588..7687 | TCONS_00038983-exon-sc0001981-1575043694:6588..7687 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001981 | supercontig | sc0001981:6588..7687 . |
Blast
The following BLAST results are available for this feature:
|
