TCONS_00038974 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038974
Unique NameTCONS_00038974
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length996

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038974 ID=TCONS_00038974|Name=TCONS_00038974|organism=Clytia hemisphaerica|type=transcript|length=996bp
GAGAAATTCTGATTTTCGTAAATTATTGTTTTACTTTCAGGTCAACTGAG
TTAAAAACAGTCCGGAGAAGAAAATACAACGTCAAAGGTACAAATGTATT
GTGGCACATTGACGGCAACCACAAGCTTATTaaatGGGGATTGGTTATCC
ATGGAGGAATCGACGGCTATTCTAGAAGgatagtttttttaaattgttct
tcAAATAATAAAGCGTCAACTGTTGCCTCGTTATTTGAAAATGCAGTTGG
GACCTATGGTTTGCCAAGTAGAGTTAGAGCTGATATGGGAAGTGAAAATG
TTGATGTTGAACGATACATGAATTTGCGACGTGGATTAAACAGAGGAAGT
TTCATTGCTGGTAGAAGCGTTCACAACCAGAGGATTGAACGTCTCTGGAG
GGACGTCTACTACGGATGCACTGggtttttttatgacttgttcGAATGCT
TAATGGATAATAGactgttaaatgttgaaaacgTTATTCACATGTGGGCT
CTCCATTATGTTTTCATCTCAAGAATTAATCAAGTATTACTGAAATTCAT
GTCAGGATGGGAGAATCATTCACTTTCAAGTGAAAAACAACGAACACCGA
TACAATTGTGGGTGATTGGCTTGAACAGTGATATGTTTGAAGAACCTGAA
CAGttggAGTATTATGGGGTCGATTGGGAAGGGCCGATCAATACGCAACC
AAGGAGTGAAGTGAACTTAATGGAACCTGCGTGCCCATTACAAGAAAGAG
ATTTCATGGAACTGCAAAGACTTGTTGATCCTACAAGTGAAAGTGCTGAC
TACGGAGTAgacttatataaaaaaactctCGAATATATTTATCGAAAGAT
TATGTAATTTATTCTAATTAATCATCAAAATATACCAATGAGATATTGAG
CACAAACTCTTTTTATCAAATCTTCGTCATTCAAGGCATACCATAAAACT
TTCTGCACAAACTCTTTTTATCAAACCTTCGTCATTCAAGGCATAC
Run BLAST on NCBI

protein sequence of TCONS_00038974-protein

>TCONS_00038974-protein ID=TCONS_00038974-protein|Name=TCONS_00038974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
EILIFVNYCFTFRSTELKTVRRRKYNVKGTNVLWHIDGNHKLIKWGLVIH
GGIDGYSRRIVFLNCSSNNKASTVASLFENAVGTYGLPSRVRADMGSENV
DVERYMNLRRGLNRGSFIAGRSVHNQRIERLWRDVYYGCTGFFYDLFECL
MDNRLLNVENVIHMWALHYVFISRINQVLLKFMSGWENHSLSSEKQRTPI
QLWVIGLNSDMFEEPEQLEYYGVDWEGPINTQPRSEVNLMEPACPLQERD
FMELQRLVDPTSESADYGVDLYKKTLEYIYRKIM
Run BLAST on NCBI

transcript from alignment at sc0001980:14104..16245-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038974 ID=TCONS_00038974|Name=TCONS_00038974|organism=Clytia hemisphaerica|type=transcript|length=2142bp|location=Sequence derived from alignment at sc0001980:14104..16245- (Clytia hemisphaerica)
GAGAAATTCTGATTTTCGTAAATTATTGTTTTACTTTCAGGTCAACTGAG
TTAAAAACAGTCCGGAGAAGAAAATACAACGTCAAAGGTACAAATGTATT
GTGGCACATTGACGGCAACCACAAGCTTATTAAGTAATTTTTTAATTTTT
CATCTGTCTTCTTTGTCAATCTGAGCTACTTGGAATTGATTTTCGTTACT
TTTAAACTAAATAATGCGTGTAAAAATAGTGATAACGCTGAAAATTATCG
AGGAAACGTCTGGCTTTGCTCATATACCTTAAGGGCGCGTTTTTTCGCGT
TTTTCGCATTTTTTCGCGAAAGTTTCTGCCAGGTAAGAAATTAAACAAGA
AATTCGCGAAAGTTAATTTCGCGGAAAACAAATTTTTCAATAAAGTTTTT
GCTACTAAAATTGAACATTTACAAACAATCGTGAAAGTTTCTGCCGTAAA
TTTTTTCACAAAGTAAAAATCGCGAAACTTAATTCCGCGAAATTTCGCGA
CTTTTCGATCTCCAGAAACTTTCTGCCGGCGAAAGTTTCTGCCCTTAAAG
TATGTTCAACTTTTTCTTTCATTTTAGATGGGGATTGGTTATCCATGGAG
GAATCGACGGCTATTCTAGAAGGATAGTTTTTTTAAATTGTTCTTCAAAT
AATAAAGCGTCAACTGTTGCCTCGTTATTTGAAAATGCAGTTGGGACCTA
TGGTTTGCCAAGTAGAGTTAGAGCTGATATGGGAAGTGAAAATGTTGATG
TTGAACGGTGAGTGTTTCACAGTTTTTTAACATGATTCTCAAAAGAAGTT
GTTTATCAAAAAGTAAGATCCTGGTGCTTTGAGCTCTCTACATTCTTCTT
GTGTAGAGTTAGGCCATGTTATTTTGAAATACTATTTGATTCTACTTGGA
CTATGACTATTTAATAGAACTTGAGGATTTTCTATATATCCTCAATATAT
GAATTCTGTTTTGTCTTTTTCTGGACACACTGCGGTGCGGCTCTTGCAAA
TAATATAGATATGATAACTTGATGAATCTATTCTACATTTCAGATACATG
AATTTGCGACGTGGATTAAACAGAGGAAGTTTCATTGCTGGTAGAAGCGT
TCACAACCAGAGGATTGAACGTCTCTGGAGGGACGTCTACTACGGATGCA
CTGGGTTTTTTTATGACTTGTTCGAATGCTTAATGGATAATAGACTGTTA
AATGTTGAAAACGTTATTCACATGTGGGCTCTCCATTATGTTTTCATCTC
AAGAATTAATCAAGTATTACTGAAATTCATGTCAGGATGGGAGAATCATT
CACTTTCAAGTGAAAAACAACGAACACCGATACAATTGTGGGTGATTGGC
TTGAACAGTGATATGTTTGAAGAACCTGAACAGGTAACAAAGCATTCATA
ACGTTCGAAAATATTTTGATTGCCCACTCAACCGTCATGACAACAGACGT
TCGATTTTGACGTTCGAAACGCTAGAAAGGCTTCTTTTTTGACGTCAATC
CAAAATGAATCCGGGTGTAAAAGTTACTTTTTAGCGTTTTTAATCGCAAT
TTTGTTGTGAAACTTTTGAAAGAATTTCTGTGTACTTTCGCAAAAATAAT
CAATCTTTAGCGAAAAATGTCAAACTCGGGAAATAATGTCTTTACTTAAT
ATTTTATCGGGCAACATCATAGAATCTTGACCTCCGTCTAGCGTATCGCC
CTCACAAGCTCGGGCTACACTTTGACGTCGGTCAAGATTCTACGGTATTG
CCCTCCAAAACATTTAGTATAGGGTTAGTATTGACTTTTTTCTTTTTAGT
TGGAGTATTATGGGGTCGATTGGGAAGGGCCGATCAATACGCAACCAAGG
AGTGAAGTGAACTTAATGGAACCTGCGTGCCCATTACAAGAAAGAGATTT
CATGGAACTGCAAAGACTTGTTGATCCTACAAGTGAAAGTGCTGACTACG
GAGTAGACTTATATAAAAAAACTCTCGAATATATTTATCGAAAGATTATG
TAATTTATTCTAATTAATCATCAAAATATACCAATGAGATATTGAGCACA
AACTCTTTTTATCAAATCTTCGTCATTCAAGGCATACCATAAAACTTTCT
GCACAAACTCTTTTTATCAAACCTTCGTCATTCAAGGCATAC

Coding sequence (CDS) from alignment at sc0001980:14104..16245-

>TCONS_00038974 ID=TCONS_00038974|Name=TCONS_00038974|organism=Clytia hemisphaerica|type=CDS|length=3420bp|location=Sequence derived from alignment at sc0001980:14104..16245- (Clytia hemisphaerica)
TTGGAGTATTATGGGGTCGATTGGGAAGGGCCGATCAATACGCAACCAAG
GAGTGAAGTGAACTTAATGGAACCTGCGTGCCCATTACAAGAAAGAGATT
TCATGGAACTGCAAAGACTTGTTGATCCTACAAGTGAAAGTGCTGACTAC
GGAGTAGACTTATATAAAAAAACTCTCGAATATATTTATCGAAAGATTAT
GTAAATACATGAATTTGCGACGTGGATTAAACAGAGGAAGTTTCATTGCT
GGTAGAAGCGTTCACAACCAGAGGATTGAACGTCTCTGGAGGGACGTCTA
CTACGGATGCACTGGGTTTTTTTATGACTTGTTCGAATGCTTAATGGATA
ATAGACTGTTAAATGTTGAAAACGTTATTCACATGTGGGCTCTCCATTAT
GTTTTCATCTCAAGAATTAATCAAGTATTACTGAAATTCATGTCAGGATG
GGAGAATCATTCACTTTCAAGTGAAAAACAACGAACACCGATACAATTGT
GGGTGATTGGCTTGAACAGTGATATGTTTGAAGAACCTGAACAGATGGGG
ATTGGTTATCCATGGAGGAATCGACGGCTATTCTAGAAGGATAGTTTTTT
TAAATTGTTCTTCAAATAATAAAGCGTCAACTGTTGCCTCGTTATTTGAA
AATGCAGTTGGGACCTATGGTTTGCCAAGTAGAGTTAGAGCTGATATGGG
AAGTGAAAATGTTGATGTTGAACGGAAATTCTGATTTTCGTAAATTATTG
TTTTACTTTCAGGTCAACTGAGTTAAAAACAGTCCGGAGAAGAAAATACA
ACGTCAAAGGTACAAATGTATTGTGGCACATTGACGGCAACCACAAGCTT
ATTAATTGGAGTATTATGGGGTCGATTGGGAAGGGCCGATCAATACGCAA
CCAAGGAGTGAAGTGAACTTAATGGAACCTGCGTGCCCATTACAAGAAAG
AGATTTCATGGAACTGCAAAGACTTGTTGATCCTACAAGTGAAAGTGCTG
ACTACGGAGTAGACTTATATAAAAAAACTCTCGAATATATTTATCGAAAG
ATTATGTAAATACATGAATTTGCGACGTGGATTAAACAGAGGAAGTTTCA
TTGCTGGTAGAAGCGTTCACAACCAGAGGATTGAACGTCTCTGGAGGGAC
GTCTACTACGGATGCACTGGGTTTTTTTATGACTTGTTCGAATGCTTAAT
GGATAATAGACTGTTAAATGTTGAAAACGTTATTCACATGTGGGCTCTCC
ATTATGTTTTCATCTCAAGAATTAATCAAGTATTACTGAAATTCATGTCA
GGATGGGAGAATCATTCACTTTCAAGTGAAAAACAACGAACACCGATACA
ATTGTGGGTGATTGGCTTGAACAGTGATATGTTTGAAGAACCTGAACAGA
TGGGGATTGGTTATCCATGGAGGAATCGACGGCTATTCTAGAAGGATAGT
TTTTTTAAATTGTTCTTCAAATAATAAAGCGTCAACTGTTGCCTCGTTAT
TTGAAAATGCAGTTGGGACCTATGGTTTGCCAAGTAGAGTTAGAGCTGAT
ATGGGAAGTGAAAATGTTGATGTTGAACGGAAATTCTGATTTTCGTAAAT
TATTGTTTTACTTTCAGGTCAACTGAGTTAAAAACAGTCCGGAGAAGAAA
ATACAACGTCAAAGGTACAAATGTATTGTGGCACATTGACGGCAACCACA
AGCTTATTAATTGGAGTATTATGGGGTCGATTGGGAAGGGCCGATCAATA
CGCAACCAAGGAGTGAAGTGAACTTAATGGAACCTGCGTGCCCATTACAA
GAAAGAGATTTCATGGAACTGCAAAGACTTGTTGATCCTACAAGTGAAAG
TGCTGACTACGGAGTAGACTTATATAAAAAAACTCTCGAATATATTTATC
GAAAGATTATGTAAATACATGAATTTGCGACGTGGATTAAACAGAGGAAG
TTTCATTGCTGGTAGAAGCGTTCACAACCAGAGGATTGAACGTCTCTGGA
GGGACGTCTACTACGGATGCACTGGGTTTTTTTATGACTTGTTCGAATGC
TTAATGGATAATAGACTGTTAAATGTTGAAAACGTTATTCACATGTGGGC
TCTCCATTATGTTTTCATCTCAAGAATTAATCAAGTATTACTGAAATTCA
TGTCAGGATGGGAGAATCATTCACTTTCAAGTGAAAAACAACGAACACCG
ATACAATTGTGGGTGATTGGCTTGAACAGTGATATGTTTGAAGAACCTGA
ACAGATGGGGATTGGTTATCCATGGAGGAATCGACGGCTATTCTAGAAGG
ATAGTTTTTTTAAATTGTTCTTCAAATAATAAAGCGTCAACTGTTGCCTC
GTTATTTGAAAATGCAGTTGGGACCTATGGTTTGCCAAGTAGAGTTAGAG
CTGATATGGGAAGTGAAAATGTTGATGTTGAACGGAAATTCTGATTTTCG
TAAATTATTGTTTTACTTTCAGGTCAACTGAGTTAAAAACAGTCCGGAGA
AGAAAATACAACGTCAAAGGTACAAATGTATTGTGGCACATTGACGGCAA
CCACAAGCTTATTAATTGGAGTATTATGGGGTCGATTGGGAAGGGCCGAT
CAATACGCAACCAAGGAGTGAAGTGAACTTAATGGAACCTGCGTGCCCAT
TACAAGAAAGAGATTTCATGGAACTGCAAAGACTTGTTGATCCTACAAGT
GAAAGTGCTGACTACGGAGTAGACTTATATAAAAAAACTCTCGAATATAT
TTATCGAAAGATTATGTAAATACATGAATTTGCGACGTGGATTAAACAGA
GGAAGTTTCATTGCTGGTAGAAGCGTTCACAACCAGAGGATTGAACGTCT
CTGGAGGGACGTCTACTACGGATGCACTGGGTTTTTTTATGACTTGTTCG
AATGCTTAATGGATAATAGACTGTTAAATGTTGAAAACGTTATTCACATG
TGGGCTCTCCATTATGTTTTCATCTCAAGAATTAATCAAGTATTACTGAA
ATTCATGTCAGGATGGGAGAATCATTCACTTTCAAGTGAAAAACAACGAA
CACCGATACAATTGTGGGTGATTGGCTTGAACAGTGATATGTTTGAAGAA
CCTGAACAGATGGGGATTGGTTATCCATGGAGGAATCGACGGCTATTCTA
GAAGGATAGTTTTTTTAAATTGTTCTTCAAATAATAAAGCGTCAACTGTT
GCCTCGTTATTTGAAAATGCAGTTGGGACCTATGGTTTGCCAAGTAGAGT
TAGAGCTGATATGGGAAGTGAAAATGTTGATGTTGAACGGAAATTCTGAT
TTTCGTAAATTATTGTTTTACTTTCAGGTCAACTGAGTTAAAAACAGTCC
GGAGAAGAAAATACAACGTCAAAGGTACAAATGTATTGTGGCACATTGAC
GGCAACCACAAGCTTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023432XLOC_023432Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038974-exon-sc0001980-1575043694:16113..16245TCONS_00038974-exon-sc0001980-1575043694:16113..16245Clytia hemisphaericaexon
TCONS_00038974-exon-sc0001980-1575043694:15489..15668TCONS_00038974-exon-sc0001980-1575043694:15489..15668Clytia hemisphaericaexon
TCONS_00038974-exon-sc0001980-1575043694:14863..15202TCONS_00038974-exon-sc0001980-1575043694:14863..15202Clytia hemisphaericaexon
TCONS_00038974-exon-sc0001980-1575043694:14104..14446TCONS_00038974-exon-sc0001980-1575043694:14104..14446Clytia hemisphaericaexon
TCONS_00038974-exon-sc0001980-1510915933:16113..16245TCONS_00038974-exon-sc0001980-1510915933:16113..16245Clytia hemisphaericaexon
TCONS_00038974-exon-sc0001980-1510915933:15489..15668TCONS_00038974-exon-sc0001980-1510915933:15489..15668Clytia hemisphaericaexon
TCONS_00038974-exon-sc0001980-1510915933:14863..15202TCONS_00038974-exon-sc0001980-1510915933:14863..15202Clytia hemisphaericaexon
TCONS_00038974-exon-sc0001980-1510915933:14104..14446TCONS_00038974-exon-sc0001980-1510915933:14104..14446Clytia hemisphaericaexon
TCONS_00038974-exon-sc0001980-1491911889:16113..16245TCONS_00038974-exon-sc0001980-1491911889:16113..16245Clytia hemisphaericaexon
TCONS_00038974-exon-sc0001980-1491911889:15489..15668TCONS_00038974-exon-sc0001980-1491911889:15489..15668Clytia hemisphaericaexon
TCONS_00038974-exon-sc0001980-1491911889:14863..15202TCONS_00038974-exon-sc0001980-1491911889:14863..15202Clytia hemisphaericaexon
TCONS_00038974-exon-sc0001980-1491911889:14104..14446TCONS_00038974-exon-sc0001980-1491911889:14104..14446Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038974-proteinTCONS_00038974-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001980supercontigsc0001980:14104..16245 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30731	1.40671	1.07187	0.549298	20.9734	16.2852	10.7221	12.0454	7.4836	8.98732	9.04302	7.49886	5.17779	3.34894	2.6255	2.4998	2.94418	2.60146	6.08593	5.51602	2.63096	2.9976	2.69534	3.12915	5.32401	5.44269	2.90522	2.83666	2.0014	1.3764
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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