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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038971 ID=TCONS_00038971|Name=TCONS_00038971|organism=Clytia hemisphaerica|type=transcript|length=1422bp
attctgggtaatattcgattggttcgattgaatTATGccgttcgattgca
ttcgattacTCGTGGTCGATCATGTTCGATTTCCGTCGATTATATTCGAT
TTTCATTGATTATATTCCATGTTCGCTGATTATATTCGATGCTTGTCGAT
TATGTTCGAAGTCTCAATCAAACCGCAATCAAATCCAAAAATTGCGGTAA
attttgattgagattcgattgcgcaTTCGACTatcgaatttcaatcgatc
AAATgagttcgatttggtttgattgattcaatCGTCAATCCCGTTCAATT
GAGACGTGAGATTGTCAAATGATCAGACTTTACGACCAAAACGCATTTTT
TTTACCTCCCTTGAAATTTTAGACACAACGCTTGAGCGCTTATATTCCCG
GGCCAattctgagaagtttgaattacggaaaaggtgtattgacaatctca
atcaaacaggatcaacaatcaaaccaatcaaaccagATTGAACGCAGTCA
AtcaattgaaatttgattgtcggAGGGCAAAATTCTGGGTattatttgat
tggttcgattgaaatttgccgttcgattgctcgTCGATCATGTTCAATTT
CTGTCGATTATATTCGATGTTCGTCGATTACGCTCGATAtatcaatcaaa
ccaaaatcaaatgtgaaaaatgcggtaatatttgattgagattcaattgc
gttcgatttggtttgattgatttgatCCTTGGTcccgttcgattgacatc
gtctggaccTATCGAACTTTGCTGTAAAATCTTCAGTTcaatttcaatta
taaatttggTTCAGGAATCAAACACCTATCGTTTAATATTGTTCGATTGA
TATCATTGATCATCGGTCCTCTTattaaaaagtagaaaaaaagattAAGG
AGTGTTTATCAGCCAAATCAAGGTGGTCCACCTGCAAAAAGATCCTTCAC
TCCCAAAAAGACATGGACAGCAACGTTTTtttgtttatcagaaaaaggtg
CTACACACACTCCATCATCCTCCCAATACTTTTTATATGGTAACGCAGGG
CTTGGGAAAAAACGAATACAGATGCCCAACACAGCAAGTCACCTTGACTT
ACAATTAAACTTGGAAGAGGAGTTTCCAAAGCTCTGCATTTGTTCAGGGC
GGTTTATGCTGTACAAAGCAACTGGTGGTGGGAGTGGTAAGCGACAACTC
CAACGGATTGAACTTGGTCCTTGTGGTTACTCTGTCCCATATTTAAGGGA
TAACTGTAATGTATCTCACTCAACAATTTACATTGTACCAATCCAGCATA
CTCTCGACATGACAGCAGTAGTAAAGccTTCTTACAATTCACCAACGGTT
GATTGTCAGTTTTGTGGAGATATAATCGAACTAGCCCTTTTAGAGGAACA
CACCAAGAGTTGCAACAAGGTA Run BLAST on NCBI protein sequence of TCONS_00038971-protein >TCONS_00038971-protein ID=TCONS_00038971-protein|Name=TCONS_00038971-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MPNTASHLDLQLNLEEEFPKLCICSGRFMLYKATGGGSGKRQLQRIELGP
CGYSVPYLRDNCNVSHSTIYIVPIQHTLDMTAVVKPSYNSPTVDCQFCGD
IIELALLEEHTKSCNKV Run BLAST on NCBI transcript from alignment at sc0001980:5083..7441+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038971 ID=TCONS_00038971|Name=TCONS_00038971|organism=Clytia hemisphaerica|type=transcript|length=2359bp|location=Sequence derived from alignment at sc0001980:5083..7441+ (Clytia hemisphaerica)
attctgggtaatattcgattggttcgattgaatTATGccgttcgattgca
ttcgattacTCGTGGTCGATCATGTTCGATTTCCGTCGATTATATTCGAT
TTTCATTGATTATATTCCATGTTCGCTGATTATATTCGATGCTTGTCGAT
TATGTTCGAAGTCTCAATCAAACCGCAATCAAATCCAAAAATTGCGGTAA
attttgattgagattcgattgcgcaTTCGACTatcgaatttcaatcgatc
AAATgagttcgatttggtttgattgattcaatCGTCAATCCCGTTCAATT
GAGACGTGAGATTGTCAAATGATCAGACTTTACGACCAAAACGCATTTTT
TTTACCTCCCTTGAAATTTTAGACACAACGCTTGAGCGCTTATATTCCCG
GGCCAattctgagaagtttgaattacggaaaaggtgtattgacaatctca
atcaaacaggatcaacaatcaaaccaatcaaaccagATTGAACGCAGTCA
AtcaattgaaatttgattgtcggAGGGCAAAATTCTGGGTattatttgat
tggttcgattgaaatttgccgttcgattgctcgTCGATCATGTTCAATTT
CTGTCGATTATATTCGATGTTCGTCGATTACGCTCGATAtatcaatcaaa
ccaaaatcaaatgtgaaaaatgcggtaatatttgattgagattcaattgc
gttcgatttggtttgattgatttgatCCTTGGTcccgttcgattgacatc
gtctggaccTATCGAACTTTGCTGTAAAATCTTCAGTTcaatttcaatta
taaatttggTTCAGGAATCAAACACCTATCGTTTAATATTGTTCGATTGA
TATCATTGATCATCGGTCCTCTTattaaaaagtagaaaaaaagattAAGG
TATGTGAAATTTGGCATAATTGTTGTTTAGTCCCTCACGGGGATCAAATT
TTAACAGTCCAAATTTTGACTTCAGATCTcaacacaaaaaaaaagaaact
tactTGGAAAATACAGTACAATACGATTTACATAAACCGGTGACCGGTTA
AAAACACTGATTTACACTCAGAACATTGTGAATTGGAAAACGTAAAGGGt
gttttagttttttctcaaatacCCTATGATTTGCTCTGATTAATCTTGAA
AATGAAGGATTTGACAAAACAAAGTTGAGATTCGTATCATATAACGATCC
ACTCTTTATATTTGAATGACTAATTTCACATTTTACGACAGcttttaaat
aaatttctatTACATGTCTATAAATAAATAATACAAAATACGAATCATAT
AGGTCACTGATTTTCTTTCTCGTGCATTGCCAAGTGACAAAGATATAAAA
CATTTAATATTAATTTTACTATTTTACTACTAGTTTAATCCCGACTTAAA
GTTTCTTATATAGTAATTGCAGCTTAGTCCCGAACTATGGTTTCTATATA
TATAATAATTGCAGTTTAGTCCCAAACTATGGTTTCTATATAATAATTGC
AGTTTAGTCCCGAACTATGATTTCTATATAATAATTGCAGTTTAGTCCAG
AATTATAGTTTCTTCCTTCTTATCTTTTCGGGATCGAACTTTAGTCCCCT
GTCGGGATTAAACATCAATTATGCCTgaaatttctgaagaaaaaagtctt
tacaatttttatacatttttattcAGGAGTGTTTATCAGCCAAATCAAGG
TGGTCCACCTGCAAAAAGATCCTTCACTCCCAAAAAGACATGGACAGCAA
CGTTTTtttgtttatcagaaaaaggtgCTACACACACTCCATCATCCTCC
CAATACTTTTTATATGGTAACGCAGGGCTTGGGAAAAAACGAATACAGAT
GCCCAACACAGCAAGTCACCTTGACTTACAATTAAACTTGGAAGAGGAGT
TTCCAAAGCTCTGCATTTGTTCAGGGCGGTTTATGCTGTACAAAGCAACT
GGTGGTGGGAGTGGTAAGCGACAACTCCAACGGATTGAACTTGGTCCTTG
TGGTTACTCTGTCCCATATTTAAGGGATAACTGTAATGTATCTCACTCAA
CAATTTACATTGTACCAATCCAGCATACTCTCGACATGACAGCAGTAGTA
AAGGTTAGTTTCTTttcctttgtattttttataatgagcAATTGAAACCC
TTCTCTTTAGAAAGATTCTCTTCTTTCTTGGTAAAATTTGTTAGAACAAc
tataaaaaattaaacaagTGTGAAAGTctaacttttttatatttttaatt
ttcttttttttagccTTCTTACAATTCACCAACGGTTGATTGTCAGTTTT
GTGGAGATATAATCGAACTAGCCCTTTTAGAGGAACACACCAAGAGTTGC
AACAAGGTA Coding sequence (CDS) from alignment at sc0001980:5083..7441+ >TCONS_00038971 ID=TCONS_00038971|Name=TCONS_00038971|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0001980:5083..7441+ (Clytia hemisphaerica)
ATGCCCAACACAGCAAGTCACCTTGACTTACAATTAAACTTGGAAGAGGA
GTTTCCAAAGCTCTGCATTTGTTCAGGGCGGTTTATGCTGTACAAAGCAA
CTGGTGGTGGGAGTGGTAAGCGACAACTCCAACGGATTGAACTTGGTCCT
TGTGGTTACTCTGTCCCATATTTAAGGGATAACTGTAATGTATCTCACTC
AACAATTTACATTGTACCAATCCAGCATACTCTCGACATGACAGCAGTAG
TAAAGccTTCTTACAATTCACCAACGGTTGATTGTCAGTTTTGTGGAGAT
ATAATCGAACTAGCCCTTTTAGAGGAACACACCAAGAGTTGCAACAAGGT
AATGCCCAACACAGCAAGTCACCTTGACTTACAATTAAACTTGGAAGAGG
AGTTTCCAAAGCTCTGCATTTGTTCAGGGCGGTTTATGCTGTACAAAGCA
ACTGGTGGTGGGAGTGGTAAGCGACAACTCCAACGGATTGAACTTGGTCC
TTGTGGTTACTCTGTCCCATATTTAAGGGATAACTGTAATGTATCTCACT
CAACAATTTACATTGTACCAATCCAGCATACTCTCGACATGACAGCAGTA
GTAAAGccTTCTTACAATTCACCAACGGTTGATTGTCAGTTTTGTGGAGA
TATAATCGAACTAGCCCTTTTAGAGGAACACACCAAGAGTTGCAACAAGG
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038971-exon-sc0001980-1491911889:5083..5981 | TCONS_00038971-exon-sc0001980-1491911889:5083..5981 | Clytia hemisphaerica | exon |
| TCONS_00038971-exon-sc0001980-1510915933:5083..5981 | TCONS_00038971-exon-sc0001980-1510915933:5083..5981 | Clytia hemisphaerica | exon |
| TCONS_00038971-exon-sc0001980-1575043694:5083..5981 | TCONS_00038971-exon-sc0001980-1575043694:5083..5981 | Clytia hemisphaerica | exon |
| TCONS_00038971-exon-sc0001980-1491911889:6759..7185 | TCONS_00038971-exon-sc0001980-1491911889:6759..7185 | Clytia hemisphaerica | exon |
| TCONS_00038971-exon-sc0001980-1510915933:6759..7185 | TCONS_00038971-exon-sc0001980-1510915933:6759..7185 | Clytia hemisphaerica | exon |
| TCONS_00038971-exon-sc0001980-1575043694:6759..7185 | TCONS_00038971-exon-sc0001980-1575043694:6759..7185 | Clytia hemisphaerica | exon |
| TCONS_00038971-exon-sc0001980-1491911889:7346..7441 | TCONS_00038971-exon-sc0001980-1491911889:7346..7441 | Clytia hemisphaerica | exon |
| TCONS_00038971-exon-sc0001980-1510915933:7346..7441 | TCONS_00038971-exon-sc0001980-1510915933:7346..7441 | Clytia hemisphaerica | exon |
| TCONS_00038971-exon-sc0001980-1575043694:7346..7441 | TCONS_00038971-exon-sc0001980-1575043694:7346..7441 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001980 | supercontig | sc0001980:5083..7441 + |
Blast
The following BLAST results are available for this feature:
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