TCONS_00038970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038970
Unique NameTCONS_00038970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038970 ID=TCONS_00038970|Name=TCONS_00038970|organism=Clytia hemisphaerica|type=transcript|length=679bp
AGAGATTGTAGGTGAGGTTCGATGGAGACGTCAGTGTGTACTTGTGAAAG
GATGTTGGCCAAGAGGTTTCTCATCTCGTCGTGGCGTTGGTGGATGAAAC
CTCCTTTCGGACACGAAAGGGCATGGTCGACATCGAATCGAAGGCCACAT
GCACAATTGATCGGAAGGTATTTCGGTGTCCATCTGTACCTCAAGCAAAG
GACATCAACAAATTCTCTTTTGTTCAGACAGAAGCCTTCACTTTCAATCG
GTATGATCGTCAACCAGCTTGAAGCACCTTTGCAAGAAGCGAGTTCGTTT
GCTTTTCGCTGCTCAACGCTCATCCTCTCCCTAAGTACATTCAACGTATC
GTTTTCTCGATCTTCCTTCGACTTGGTGATTTCTCTCTTGACTTTAGCGT
CGTCAGGTATGTCGACGTTGCTTGCGTTTTGGTGCTTTATTCGGCTGGAC
AGGTTGGAAGTTACTTTCTGTGAGCTGGAGAATTCTGTTATTGACCACGT
GGTAAAGATAGGGATTGAAAGACCGCCTTTTCTTGGTGGGAGTGATAGTA
AAAGGCGCTCATCGGCGGAGCAATGGTGACCATCGGTGAGGATAAGGTCG
AAAGGTGCAAGGTATTGGTGCATATCAGGGATTGTTCGGATGTGGTATGT
GAGTTTGTGCTTGAAGCCAGCGATGAAAN
Run BLAST on NCBI

protein sequence of TCONS_00038970-protein

>TCONS_00038970-protein ID=TCONS_00038970-protein|Name=TCONS_00038970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
FIAGFKHKLTYHIRTIPDMHQYLAPFDLILTDGHHCSADERLLLSLPPRK
GGLSIPIFTTWSITEFSSSQKVTSNLSSRIKHQNASNVDIPDDAKVKREI
TKSKEDRENDTLNVLRERMSVEQRKANELASCKGASSWLTIIPIESEGFC
LNKREFVDVLCLRYRWTPKYLPINCACGLRFDVDHALSCPKGGFIHQRHD
EMRNLLANILSQVHTDVSIEPHLQS
Run BLAST on NCBI

transcript from alignment at sc0001979:20203..20881

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038970 ID=TCONS_00038970|Name=TCONS_00038970|organism=Clytia hemisphaerica|type=transcript|length=679bp|location=Sequence derived from alignment at sc0001979:20203..20881 (Clytia hemisphaerica)
NTTTCATCGCTGGCTTCAAGCACAAACTCACATACCACATCCGAACAATC
CCTGATATGCACCAATACCTTGCACCTTTCGACCTTATCCTCACCGATGG
TCACCATTGCTCCGCCGATGAGCGCCTTTTACTATCACTCCCACCAAGAA
AAGGCGGTCTTTCAATCCCTATCTTTACCACGTGGTCAATAACAGAATTC
TCCAGCTCACAGAAAGTAACTTCCAACCTGTCCAGCCGAATAAAGCACCA
AAACGCAAGCAACGTCGACATACCTGACGACGCTAAAGTCAAGAGAGAAA
TCACCAAGTCGAAGGAAGATCGAGAAAACGATACGTTGAATGTACTTAGG
GAGAGGATGAGCGTTGAGCAGCGAAAAGCAAACGAACTCGCTTCTTGCAA
AGGTGCTTCAAGCTGGTTGACGATCATACCGATTGAAAGTGAAGGCTTCT
GTCTGAACAAAAGAGAATTTGTTGATGTCCTTTGCTTGAGGTACAGATGG
ACACCGAAATACCTTCCGATCAATTGTGCATGTGGCCTTCGATTCGATGT
CGACCATGCCCTTTCGTGTCCGAAAGGAGGTTTCATCCACCAACGCCACG
ACGAGATGAGAAACCTCTTGGCCAACATCCTTTCACAAGTACACACTGAC
GTCTCCATCGAACCTCACCTACAATCTCT

Coding sequence (CDS) from alignment at sc0001979:20203..20881

>TCONS_00038970 ID=TCONS_00038970|Name=TCONS_00038970|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at sc0001979:20203..20881 (Clytia hemisphaerica)
TTCATCGCTGGCTTCAAGCACAAACTCACATACCACATCCGAACAATCCC
TGATATGCACCAATACCTTGCACCTTTCGACCTTATCCTCACCGATGGTC
ACCATTGCTCCGCCGATGAGCGCCTTTTACTATCACTCCCACCAAGAAAA
GGCGGTCTTTCAATCCCTATCTTTACCACGTGGTCAATAACAGAATTCTC
CAGCTCACAGAAAGTAACTTCCAACCTGTCCAGCCGAATAAAGCACCAAA
ACGCAAGCAACGTCGACATACCTGACGACGCTAAAGTCAAGAGAGAAATC
ACCAAGTCGAAGGAAGATCGAGAAAACGATACGTTGAATGTACTTAGGGA
GAGGATGAGCGTTGAGCAGCGAAAAGCAAACGAACTCGCTTCTTGCAAAG
GTGCTTCAAGCTGGTTGACGATCATACCGATTGAAAGTGAAGGCTTCTGT
CTGAACAAAAGAGAATTTGTTGATGTCCTTTGCTTGAGGTACAGATGGAC
ACCGAAATACCTTCCGATCAATTGTGCATGTGGCCTTCGATTCGATGTCG
ACCATGCCCTTTCGTGTCCGAAAGGAGGTTTCATCCACCAACGCCACGAC
GAGATGAGAAACCTCTTGGCCAACATCCTTTCACAAGTACACACTGACGT
CTCCATCGAACCTCACCTACAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023429XLOC_023429Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038970-proteinTCONS_00038970-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038970-exon-sc0001979-1491911889:20203..20881TCONS_00038970-exon-sc0001979-1491911889:20203..20881Clytia hemisphaericaexon
TCONS_00038970-exon-sc0001979-1510915933:20203..20881TCONS_00038970-exon-sc0001979-1510915933:20203..20881Clytia hemisphaericaexon
TCONS_00038970-exon-sc0001979-1575043694:20203..20881TCONS_00038970-exon-sc0001979-1575043694:20203..20881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001979supercontigsc0001979:20203..20881 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.68041	2.49639	2.8464	2.59792	18.6026	15.3772	15.6445	19.1805	7.42124	7.66488	6.58516	5.67374	7.44884	6.25498	4.22975	7.51947	4.84719	6.0821	4.24118	2.86121	3.04603	2.63414	1.80253	2.61012	11.2206	13.7022	0.954858	1.70896	1.08266	1.87545
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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