TCONS_00038968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038968
Unique NameTCONS_00038968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038968 ID=TCONS_00038968|Name=TCONS_00038968|organism=Clytia hemisphaerica|type=transcript|length=409bp
TTTTAGATTAAGAAGAAAGCAGGGAAACGTGTCTCAAAGAACATTACTGG
CATTCACAAGAATCCTCTGAAGAGCTCCATTGTTTTTGACAATGAATTCC
GCCAATCCTGTTATGTACAGCGCAAAGAAGGCCAGGATCTAGATGAATGG
TTTTGGAAGGACGGTTCTTTGCAAATTACTTGAAAGTCAATAAACACCGA
CCTATGATGGAAGCGTTCATTCAAAAAGGGGACGGCAAGATTAGTTCTTC
CTCCACCAGTACAAATAATATATCTCAAGTCCTCATCTATGGTACTGCAG
CAAGAAACCGTGCAGTAGACGGTGATTCGGTGGTGGTGGAATTGTTACCA
GAATCTCAATGGAAATCCAGATCTACCTCTATTCATCAGCATTCAGAATC
TAATTGTAA
Run BLAST on NCBI

transcript from alignment at sc0001979:3969..9453+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038968 ID=TCONS_00038968|Name=TCONS_00038968|organism=Clytia hemisphaerica|type=transcript|length=5485bp|location=Sequence derived from alignment at sc0001979:3969..9453+ (Clytia hemisphaerica)
TTTTAGATTAAGAAGAAAGCAGGGAAACGTGTCTCAAAGAACATTACTGG
CATTCACAAGAATCCTCTGAAGAGCTCCATTGTTTTTGACAATGAATTCC
GCCAATCCTGTTATGTACAGCGCAAAGAAGGCCAGGATCTAGATGAATGG
TTTTGGAAGTAAGAATACATAGAAAAGAGCTTGAAACTTGacttaaaatc
attttaaagatattatattttatgatatagaaagaAGCCCTACCTCTCAT
GTTGATAAAGCACAACAATTATAtataatttctcaaaatttgtgttCGCG
TGGTGCAGGAGGGAGAGAAGTTAGttctttttgtgttttaaaTGTTGTAT
AAGTAAATGTTAGTAGATAAGTAATTAAATGATAAATAATGtaggcgcag
tagtgtagtggttatcaatcTTGACTGCCGTCTAGGAGGTAGGGGTTCGA
TTCCCGCTCGGTgctgtgattcacttggcaagtgaatgtaccttcgccca
ggccaacccatgccatgtgaggggaattgggtagacagaaactcaagaaG
TCTGTCGGTGACTGTGCTAGGTATCGATTCCACAATCCATCGGGGATGAG
GTGAGAGTAGTGGTGAACATTATACCACTATAAAGCTGAAATCTGATTGA
ATAATATCAATATATACAATATAGATTAAAGACACCTTAAAAATGCGTGC
TTGTCGTACTTGTCGTTCTCTATACATCAAACCATTACTATCATACTCTC
CTTGAAACAGACGTAGAAACGTGGTTGTCTGACATGCCCACTAAACAATG
TTTAGTCATATACCCTCGAAGTCCGtgtttgccgtgctcagcgtgtccgT
CAAAATATGTTTACTCGTATACCCTCGCagtccgtgcttgccgtgctcag
cgtgtccgACAAAATATGTCTAGTCATATACCCTTGAagtccgtgcttgc
cgtgctcagcgtgtccgACAAAATATGTCTAGTCATATACCCTTGAagtc
cgtgcttgccgtgctcagcgtgtctgagttgtcaaagaaaattcttacac
cctacctttactttacaccctACTCGTATACACCcttcacacacacacac
acacagacacttGGCACATACACCCCCCACACAGTGTCTTTATATAGCGT
GTTTGCTGTACTAAGCGTGCTCATCAAACGATGTTTAGAAATACACCCTC
GCAGTCCGTGCTTGCCATGCTCAGCGTGTCCGACGAAATATGTTTAGTCA
TATACCCTTGAagtccgtgcttgccgtgctcagcgtgtctgaattgtcga
agaaaattcttacaccctacctttactttacaccctACTCATATACACCC
TTCACACACACTTGGCacataccccccccccccacacacACAGTGTCTTC
ATATATCCCGTGTTTGCCGTGCTCATCGTGCTCATCAAACGATGTTTAGT
CATATACCCTCAAAGTCtgtgcttgccgtgctcagcgtgtccgtgaattt
cgaaacaaaaaaaaacgtgGGCCTTTTGTTCTCAATTTCCAAGACCAGAC
GAAGGAAACCCTTGGGCGGTCCGGCAACTGGTAAGGTAAAGCAGTCAGAA
ATGAAAACTTTCACAAATCCCAGACCGGGCAGGATTGGTTCTGGTCATTG
AATTCTTGAAGTTGAAGTAACTTAGAAGTTGAAATTTTAACTAGAGGTCG
CGTTGGGTAGTTTCAGCTGAACATGGCATCGAAAGATATTCAAAAGACTG
GTAGCAAGAGGGGCTATGGATCCTGTCAGAGTTGTGGGCAGGAATACCGC
AATCGGAAAAAGCCGAAAGTTTGCGACAGTGACAATCGTAACAACCTGAA
ATTGGACGATAAAAAAGTTCTTCCAGTCTCCGTTGTTGTTTACAACGATG
ACAGAGGATGTCTAAAATCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNCCCCTTCTGCAACTGTCGACAAAATTCAGTAGAAacaacacag
cattttttgatgcattgctctgattactctaatgacagacttgtgatgtt
tgacagccttctccaacttgacataaccttgtttccatttaatcccaaaa
cattgtgtagaatacttctttatggcgacCCCGATTTTAGCATTGTCAAA
AATCACGATATATTGAgtataacaataaaatttatccGTGACACaagccg
ttttgggggaccgttattttagtATTTTACTCTAAACTGCTCTCcaagct
ctttttgtttttgttttttattttttgttagtatttatcctctttagtaa
gttttttttctccatgcatttatcaattgatttattaatttattgttagc
ttagtttgggttccttcctcctggcggtatgatctggtggtccttttgcg
ggaggttagGANNTTGAGTCACTCGGTACTGTCTCGAAAACCTACATTTA
AACCACTTTTTTAGTAATGTTTTTACTTCACGTTTATTCTGAGAAGATAA
ATAATTATCTTTTAATGTTACAGGGACGGTTCTTTGCAAATTACTTGAAA
GTCAATAAACACCGACCTATGATGGAAGCGTTCATTCAAAAAGGGTATGA
AATATAGAGTTTTGATACATACTAACGGCATCTTTAACACTTTATGAAGC
TTTTTATCATACCAACttgtgtttttatttaaaatattcACAGAACCAAT
CagtaaaagaagcaaaaaaacaatttcaatctTCTTCTTAAATCAACTTA
AGGAAGTGTCTAAAGTAACTTCTTCATAAAGTCTTCATAGTTATCATATA
TGataatgttcttttttataattatttagCAATAAAGTTTCctcataaaa
attttctttcatttctaaACAGGGACGGCAAGATTAGTTCTTCCTCCACC
AGTACAAATAATATATCTCAAGTCCTCATCTATGGTACTGCAGCAAGGTT
TGTTTTCAATGCATGATGTTCACCAGTGCAATGGCTTATTTTTGCCACTC
AAAGGTGTACAACCGTAAAACGTTGATCCTTCAAACTTCTGGACTATTAC
CATGGCATCTCAGCGGTTTGAAAAAGCCTGGAAACCTAGAAAAGGACCTG
TTTTAAAAGGAAATCGGAATATTAGGAAAAATCGGTGAACTTTTCTTTTA
GTCTTCTTTCCAGAAGTTTTTAAGTtaagtttttttaaagcttaaatctt
aataatacttttttcaaaatttgtcaatGATATCAACCAAAATCGGCACA
CACCAAAATTATTTTGGCAAACTGCTGGGAAGTTTCGAGCTATTTTGGTC
CAGATATGACAACTATTTTCTTCTTCTTAGAAACCGTGCAGTAGACGGTG
ATTCGGTGGTGGTGGAATTGTTACCAGAATCTCAATGGAAATCCAGATCT
ACCTCTATTCATCAGCATTCAGAATCTAATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023427XLOC_023427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038968-exon-sc0001979-1491911889:3969..4126TCONS_00038968-exon-sc0001979-1491911889:3969..4126Clytia hemisphaericaexon
TCONS_00038968-exon-sc0001979-1510915933:3969..4126TCONS_00038968-exon-sc0001979-1510915933:3969..4126Clytia hemisphaericaexon
TCONS_00038968-exon-sc0001979-1575043694:3969..4126TCONS_00038968-exon-sc0001979-1575043694:3969..4126Clytia hemisphaericaexon
TCONS_00038968-exon-sc0001979-1491911889:8542..8612TCONS_00038968-exon-sc0001979-1491911889:8542..8612Clytia hemisphaericaexon
TCONS_00038968-exon-sc0001979-1510915933:8542..8612TCONS_00038968-exon-sc0001979-1510915933:8542..8612Clytia hemisphaericaexon
TCONS_00038968-exon-sc0001979-1575043694:8542..8612TCONS_00038968-exon-sc0001979-1575043694:8542..8612Clytia hemisphaericaexon
TCONS_00038968-exon-sc0001979-1491911889:8891..8965TCONS_00038968-exon-sc0001979-1491911889:8891..8965Clytia hemisphaericaexon
TCONS_00038968-exon-sc0001979-1510915933:8891..8965TCONS_00038968-exon-sc0001979-1510915933:8891..8965Clytia hemisphaericaexon
TCONS_00038968-exon-sc0001979-1575043694:8891..8965TCONS_00038968-exon-sc0001979-1575043694:8891..8965Clytia hemisphaericaexon
TCONS_00038968-exon-sc0001979-1491911889:9349..9453TCONS_00038968-exon-sc0001979-1491911889:9349..9453Clytia hemisphaericaexon
TCONS_00038968-exon-sc0001979-1510915933:9349..9453TCONS_00038968-exon-sc0001979-1510915933:9349..9453Clytia hemisphaericaexon
TCONS_00038968-exon-sc0001979-1575043694:9349..9453TCONS_00038968-exon-sc0001979-1575043694:9349..9453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001979supercontigsc0001979:3969..9453 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.81915	1.34046	0.720946	0	2.27701	3.06062	3.8699	5.2326	4.2588	4.28897	4.73024	6.57823	4.85227	7.79503	2.96949	5.70794	1.82364	4.8443	4.51657	3.91416	3.95953	3.46784	3.50374	4.03526	0.463222	2.92898	3.28138	0.981792	1.65127	3.62152
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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