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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038966 ID=TCONS_00038966|Name=TCONS_00038966|organism=Clytia hemisphaerica|type=transcript|length=2506bp
AAACTCACTCACATCATTCAATTCATTGAATTATGATTTTGGATAACTTT
AATAAATCGATAAATATGGATTTGCTGTAGTTTTAAAACCGTGTGACTTT
CTTCCTAAAGAAAAAGTGGAATtgaaataaattagaatataCTACGGTTA
TTGTATTATATCGGAtgattttctatcaattttcgTTCATCAACCTTTAA
TTAATTATAAGGTCATCTTCTGAAATGATAAGACGTCTATCTTGTATCTG
TAAAACCATTTCTGTGAAAGGATCTTTTCATCCATGAGAAGAAAGCAAGA
CTGTTCAAATTGTACCAGAGAGACAGAAGATGTTTTGTCGGTTTTCTCGG
AAGGCTTTTTCGGACCACGAAGCTAATAACTCCGTCATATCTTGACAACT
TAAGCTGAAACAAAACTCCAAACTGACTTTAACTTCGACTGTCTACTTTT
CCGGCTAAAGCACATGTTAAAACCAATCCTTCCTTTGCATTCATTGGTGT
TTCTTTTATAAACTTTATATACCTTTTGTGTAAAAAGCGCGTTTATTTTC
AATGTTGTATATATTTACATGTtacttgtttgtttgtttgtatgTTTGTC
AGTTTGTTTGTCCCCTGTGTTGGTTTAAATGTTGTTCGTCTGTGTCCGGA
TACAGTAGACTCTCATTTGAAAATCTATCTCGCAAAACTCAGGGGGTTGG
GAGTGTCCAGAGAGGTAGGCATGATACCAGTAACATGTCTTCTAGTGTGT
AAGTAACTATCTACTGATTATCCCAGGCATACTGATGAGCCCTGAGATTG
GGCGAAACGGACCAGGCGGAGTTACAACTCCCCCTGAtgcaattaaaaat
aaaaaacattttaacgAATTCAAAAACGATTTCAGTCAGTCAGGAAAAGA
CTACcgaatttaaaaacatttttaatggaTAAAGTTCTTTgcgaaaaaaa
gagaaatttttgtCCAACTGTAATAAACCCTACTTTTATCAAAGACTGTC
CTTTACTTACTCTGTGtattcttttttctgtttttgtttcttttataaTT
CTCAGGTTCTAACCTTCATTGGCAAGGATCAATTTGAATCAAGCTGAAAC
GTAGACGTAGCAGAACTTCATCATGCATgAAGATGGTCTTGCTGTCATAA
CGAAAGGTCGAAAGATTTCACAATAGCAACACCTTTACATATCGCCAAAA
ATTTTGAGTACGCGTTAAAACCAGATGCTATGTCAATGTCAATGAAACGC
TGTTGTTGAAGATGTTGTTCGGGTTTTGGTAGTCTACATCACAAAGTCTT
CGACGAGTACGGTCGAACTGAATCATTATAACAGAAGTGAAACTTGGACT
GCTTTTTTCCTAACAAATTTGTCCATCACATACACACACCTCAGCAATTG
TCATGTCCGTTAAAGTATGGAAAACAAATATTCATGCAAGTAATATCCAA
AGTTGATATCCACATTGTTGTAATTCAGCTTAGAAATCCTCTTGATCAGG
TCCGTCGTGAAAATTGGTACCTAAAAAGTAAGCCACCTGGAcgtttttaa
atttaattttggaaaaatttgcaaattgaAGACAAGAATTGTTTCCAGTc
tcttttaatttttaacattttttaattggtagtaggggaattttgttcga
ttttttggaatcgctcgaatgttttgatcaaagcacttgttatacatttt
tggaaagcggagtaggggaatcgaaattacaatgtatccaattttttttc
ggacactttggtgtgattttcggacaaatatgacggtctcagccaaaaat
catagggttaaaaattaatgaaaattttagctcgagaaaacggagacctg
ttgtatatttttggaaagctctcaaaaaattaggattagagatatattgc
tagtataggtgatttctgtacctagctcgagatattaacccttgaaaacc
gtgtttttcagccagaaacagctatgtattttgtccagtttttgcgcttt
ttgaagctcaatatctcgaaacttggaaacatcgtaatttcgattccctt
accccttagctttccaaaaatgtataacaagtgctttgatcaaaacattc
gacatattttacaaaatgccctctactatggATCCGGCAAAGTGAAGGGA
ATTCAAATGGAGCTTGAAAGTGATTTAAGTACGAAACCACTCTTTCTCAC
GTTTTTACGCCtagctatttttttcattatttcgaaatttccaaaTTATA
CACTAAATTCTACTATTTTAACCtaactttaaaaatatataaatcaggTA
TTGCTTTTGTGCAAAAATGAACATCTTTGACGCTATTTTTTAAAATATAG
CTATACTCTCGGATACGTAATAAACGTCCCTCACCCTTGCTAATTAATAT
TTCGAAGATTTTCCACTCGGGACGAACCTTAAAGGAATTTTGGCAGGAAG
AAAATTAAGTTCCTGCCAACATTTATTTTtccaccatccgccaaattgaa
ttcccg Run BLAST on NCBI transcript from alignment at sc0001978:6861..9744- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038966 ID=TCONS_00038966|Name=TCONS_00038966|organism=Clytia hemisphaerica|type=transcript|length=2884bp|location=Sequence derived from alignment at sc0001978:6861..9744- (Clytia hemisphaerica)
AAACTCACTCACATCATTCAATTCATTGAATTATGATTTTGGATAACTTT
AATAAATCGATAAATATGGATTTGCTGTAGTTTTAAAACCGTGTGACTTT
CTTCCTAAAGAAAAAGTGGAATTGAAATAAATTAGAATATACTACGGTTA
TTGTATTATATCGGATGATTTTCTATCAATTTTCGTTCATCAACCTTTAA
TTAATTATAAGGTCATCTTCTGAAATGATAAGACGTCTATCTTGTATCTG
TAAAACCATTTCTGTGAAAGGATCTTTTCATCCATGAGAAGAAAGCAAGA
CTGTTCAAATTGTACCAGAGAGACAGAAGATGTTTTGTCGGTTTTCTCGG
AAGGCTTTTTCGGACCACGAAGCTAATAACTCCGTCATATCTTGACAACT
TAAGCTGAAACAAAACTCCAAACTGACTTTAACTTCGACTGTCTACTTTT
CCGGCTAAAGCACATGTTAAAACCAATCCTTCCTTTGCATTCATTGGTGT
TTCTTTTATAAACTTTATATACCTTTTGTGTAAAAAGCGCGTTTATTTTC
AATGTTGTATATATTTACATGTTACTTGTTTGTTTGTTTGTATGTTTGTC
AGTTTGTTTGTCCCCTGTGTTGGTTTAAATGTTGTTCGTCTGTGTCCGGA
TACAGTAGACTCTCATTTGAAAATCTATCTCGCAAAACTCAGGGGGTTGG
GAGTGTCCAGAGAGGTAGGCATGATACCAGTAACATGTCTTCTAGTGTGT
AAGTAACTATCTACTGATTATCCCAGGCATACTGATGAGCCCTGAGATTG
GGCGAAACGGACCAGGCGGAGTTACAACTCCCCCTGATGCAATTAAAAAT
AAAAAACATTTTAACGAATTCAAAAACGATTTCAGTCAGTCAGGAAAAGA
CTACCGAATTTAAAAACATTTTTAATGGATAAAGTTCTTTGCGAAAAAAA
GAGAAATTTTTGTCCAACTGTAATAAACCCTACTTTTATCAAAGACTGTC
CTTTACTTACTCTGTGTATTCTTTTTTCTGTTTTTGTTTCTTTTATAATT
CTCAGGTTCTAACCTTCATTGGCAAGGATCAATTTGAATCAAGCTGAAAC
GTAGACGTAGCAGAACTTCATCATGCATGGTAAAAATGTTTTTACAAGCA
TAATGTTTTCCACAAACCTCATTTTTCTTGACGAAATGCTATTTGAGTCT
CAGATATATTTCTTCTGGAACTAAAGAGTTACCTTAAGGGAACTAATTTT
AGCGGAACTTATTTTCGTGATGCGAGGGTACTAAATTGGCGCATTTTGCG
GAACTTATTTTCGCGGTTGACACCCACTTTTGGCTGAAAATTATTTCATA
ATCCTAGGGGTTTTTAAGAATTCTTAGTAAAAAATGCATTTCATTGAACT
AATTTTCGTGGTAGACACCCAAAAACACGAAAATTAGTCCCCTTAGGGTA
TCTCTTTCGCAATCGAATTGTATGTTGTTTAATTTTTTTTCTTCTGCTGC
TTTTTAGAAGATGGTCTTGCTGTCATAACGAAAGGTCGAAAGATTTCACA
ATAGCAACACCTTTACATATCGCCAAAAATTTTGAGTACGCGTTAAAACC
AGATGCTATGTCAATGTCAATGAAACGCTGTTGTTGAAGATGTTGTTCGG
GTTTTGGTAGTCTACATCACAAAGTCTTCGACGAGTACGGTCGAACTGAA
TCATTATAACAGAAGTGAAACTTGGACTGCTTTTTTCCTAACAAATTTGT
CCATCACATACACACACCTCAGCAATTGTCATGTCCGTTAAAGTATGGAA
AACAAATATTCATGCAAGTAATATCCAAAGTTGATATCCACATTGTTGTA
ATTCAGCTTAGAAATCCTCTTGATCAGGTCCGTCGTGAAAATTGGTACCT
AAAAAGTAAGCCACCTGGACGTTTTTAAATTTAATTTTGGAAAAATTTGC
AAATTGAAGACAAGAATTGTTTCCAGTCTCTTTTAATTTTTAACATTTTT
TAATTGGTAGTAGGGGAATTTTGTTCGATTTTTTGGAATCGCTCGAATGT
TTTGATCAAAGCACTTGTTATACATTTTTGGAAAGCGGAGTAGGGGAATC
GAAATTACAATGTATCCAATTTTTTTTCGGACACTTTGGTGTGATTTTCG
GACAAATATGACGGTCTCAGCCAAAAATCATAGGGTTAAAAATTAATGAA
AATTTTAGCTCGAGAAAACGGAGACCTGTTGTATATTTTTGGAAAGCTCT
CAAAAAATTAGGATTAGAGATATATTGCTAGTATAGGTGATTTCTGTACC
TAGCTCGAGATATTAACCCTTGAAAACCGTGTTTTTCAGCCAGAAACAGC
TATGTATTTTGTCCAGTTTTTGCGCTTTTTGAAGCTCAATATCTCGAAAC
TTGGAAACATCGTAATTTCGATTCCCTTACCCCTTAGCTTTCCAAAAATG
TATAACAAGTGCTTTGATCAAAACATTCGACATATTTTACAAAATGCCCT
CTACTATGGATCCGGCAAAGTGAAGGGAATTCAAATGGAGCTTGAAAGTG
ATTTAAGTACGAAACCACTCTTTCTCACGTTTTTACGCCTAGCTATTTTT
TTCATTATTTCGAAATTTCCAAATTATACACTAAATTCTACTATTTTAAC
CTAACTTTAAAAATATATAAATCAGGTATTGCTTTTGTGCAAAAATGAAC
ATCTTTGACGCTATTTTTTAAAATATAGCTATACTCTCGGATACGTAATA
AACGTCCCTCACCCTTGCTAATTAATATTTCGAAGATTTTCCACTCGGGA
CGAACCTTAAAGGAATTTTGGCAGGAAGAAAATTAAGTTCCTGCCAACAT
TTATTTTTCCACCATCCGCCAAATTGAATTCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038966-exon-sc0001978-1575043694:8616..9744 | TCONS_00038966-exon-sc0001978-1575043694:8616..9744 | Clytia hemisphaerica | exon |
| TCONS_00038966-exon-sc0001978-1575043694:6861..8237 | TCONS_00038966-exon-sc0001978-1575043694:6861..8237 | Clytia hemisphaerica | exon |
| TCONS_00038966-exon-sc0001978-1510915933:8616..9744 | TCONS_00038966-exon-sc0001978-1510915933:8616..9744 | Clytia hemisphaerica | exon |
| TCONS_00038966-exon-sc0001978-1510915933:6861..8237 | TCONS_00038966-exon-sc0001978-1510915933:6861..8237 | Clytia hemisphaerica | exon |
| TCONS_00038966-exon-sc0001978-1491911889:8616..9744 | TCONS_00038966-exon-sc0001978-1491911889:8616..9744 | Clytia hemisphaerica | exon |
| TCONS_00038966-exon-sc0001978-1491911889:6861..8237 | TCONS_00038966-exon-sc0001978-1491911889:6861..8237 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001978 | supercontig | sc0001978:6861..9744 - |
Blast
The following BLAST results are available for this feature:
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