TCONS_00038960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038960
Unique NameTCONS_00038960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length921

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038960 ID=TCONS_00038960|Name=TCONS_00038960|organism=Clytia hemisphaerica|type=transcript|length=921bp
agtaaaaatgtttGCCTGAAAGGTACGTATAGAAAGGGGTTAAGGAATAA
ATTGGTTTGAAATTGCTTattgattttgaaagaaatatgAATACCTTTCC
CAAGAACCTTGGAGATGTTCCAGTTTTATCACCTGCTCTCCAATGATAAG
CAACCTCTTGACATTGAGTATTTGGTTTcgccattttttccaaagatGCT
TTAAGTCGGGATTCGGAAATGGTTAAAATTGGACACCAATCAGTGGTTAG
AACGGCACCCAAACATAAGCCGGAAGTTGTTTGCGGAAGAAATTGTGAAA
AGAAGGCCAAGCACATTCTCCGATCTTCTGAATCAGAAGATCAAACATAA
CCCTACAACTGAGCTCGGGAAAAAAGTTTGGCGCGAATTGAAAGCCTTTT
TAAACAACAAGTCAGCGCAAGCAGCTCTCGTCGAAAAAGCTGCATCAATT
GAACGTTGTAAGTTTACTCCAGTGTATGCTTTGTTTTCTCCAGTACTGAT
ATATTCTCTTGCTAGCTAATAATCAATCGGGGTTTCAATTTAGCTCCATT
GCCGCTACTAGATTTTGTGAAGACGGGCGACATCCATTTTTGGAGATTGA
CTGACTGGAAGGGGTGGAATGCCCAGAAGGGGGAGATAAGACTCCCGCCC
TTCCGAAATATGCTGTAATCTAACATTTATTTTCTAGCAAAATCTTCCCA
ACGTAGTATACCACATGCATCAAAAAACGTTGTAAGCAGTCATCCACCTG
GTGCTGTTTCGGCATTAGAGGCAGTTTATGCCAAAGATAAATTTATATCA
ACGGAGGCGGTAACCATCTTGGCTGGTCAAATAAAGCTGACCGAAAAACA
GGTAAAATTCTAACTGATTTTATTGATAACACTTCTTTACTGAGCTGACT
GGAATGTGAAAAATAGGAAGC
Run BLAST on NCBI

protein sequence of TCONS_00038960-protein

>TCONS_00038960-protein ID=TCONS_00038960-protein|Name=TCONS_00038960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MCLAFFSQFLPQTTSGLCLGAVLTTDWCPILTISESRLKASLEKMAKPNT
QCQEVAYHWRAGDKTGTSPRFLGKVFIFLSKSISNFKPIYSLTPFYTYLS
GKHFY
Run BLAST on NCBI

transcript from alignment at sc0001977:13405..14325

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038960 ID=TCONS_00038960|Name=TCONS_00038960|organism=Clytia hemisphaerica|type=transcript|length=921bp|location=Sequence derived from alignment at sc0001977:13405..14325 (Clytia hemisphaerica)
GCTTCCTATTTTTCACATTCCAGTCAGCTCAGTAAAGAAGTGTTATCAAT
AAAATCAGTTAGAATTTTACCTGTTTTTCGGTCAGCTTTATTTGACCAGC
CAAGATGGTTACCGCCTCCGTTGATATAAATTTATCTTTGGCATAAACTG
CCTCTAATGCCGAAACAGCACCAGGTGGATGACTGCTTACAACGTTTTTT
GATGCATGTGGTATACTACGTTGGGAAGATTTTGCTAGAAAATAAATGTT
AGATTACAGCATATTTCGGAAGGGCGGGAGTCTTATCTCCCCCTTCTGGG
CATTCCACCCCTTCCAGTCAGTCAATCTCCAAAAATGGATGTCGCCCGTC
TTCACAAAATCTAGTAGCGGCAATGGAGCTAAATTGAAACCCCGATTGAT
TATTAGCTAGCAAGAGAATATATCAGTACTGGAGAAAACAAAGCATACAC
TGGAGTAAACTTACAACGTTCAATTGATGCAGCTTTTTCGACGAGAGCTG
CTTGCGCTGACTTGTTGTTTAAAAAGGCTTTCAATTCGCGCCAAACTTTT
TTCCCGAGCTCAGTTGTAGGGTTATGTTTGATCTTCTGATTCAGAAGATC
GGAGAATGTGCTTGGCCTTCTTTTCACAATTTCTTCCGCAAACAACTTCC
GGCTTATGTTTGGGTGCCGTTCTAACCACTGATTGGTGTCCAATTTTAAC
CATTTCCGAATCCCGACTTAAAGCatctttggaaaaaatggcgAAACCAA
ATACTCAATGTCAAGAGGTTGCTTATCATTGGAGAGCAGGTGATAAAACT
GGAACATCTCCAAGGTTCTTGGGAAAGGTATTcatatttctttcaaaatc
aatAAGCAATTTCAAACCAATTTATTCCTTAACCCCTTTCTATACGTACC
TTTCAGGCaaacatttttact

Coding sequence (CDS) from alignment at sc0001977:13405..14325

>TCONS_00038960 ID=TCONS_00038960|Name=TCONS_00038960|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0001977:13405..14325 (Clytia hemisphaerica)
ATGTGCTTGGCCTTCTTTTCACAATTTCTTCCGCAAACAACTTCCGGCTT
ATGTTTGGGTGCCGTTCTAACCACTGATTGGTGTCCAATTTTAACCATTT
CCGAATCCCGACTTAAAGCatctttggaaaaaatggcgAAACCAAATACT
CAATGTCAAGAGGTTGCTTATCATTGGAGAGCAGGTGATAAAACTGGAAC
ATCTCCAAGGTTCTTGGGAAAGGTATTcatatttctttcaaaatcaatAA
GCAATTTCAAACCAATTTATTCCTTAACCCCTTTCTATACGTACCTTTCA
GGCaaacatttttac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023424XLOC_023424Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038960-proteinTCONS_00038960-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038960-exon-sc0001977-1491911889:13405..14325TCONS_00038960-exon-sc0001977-1491911889:13405..14325Clytia hemisphaericaexon
TCONS_00038960-exon-sc0001977-1510915933:13405..14325TCONS_00038960-exon-sc0001977-1510915933:13405..14325Clytia hemisphaericaexon
TCONS_00038960-exon-sc0001977-1575043694:13405..14325TCONS_00038960-exon-sc0001977-1575043694:13405..14325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001977supercontigsc0001977:13405..14325 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0498283	0	0	0	0.134392	0.159298	0.320311	0.239897	0.167957	0.312063	0.605793	0.232298	0.364532	0.206493	0.169765	0.30364	0.149624	0.191699	0	0.0554278	0.0481768	0.352484	0	0.103883	0.748978	0.334222	0	0	0.0553055	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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