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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038955 ID=TCONS_00038955|Name=TCONS_00038955|organism=Clytia hemisphaerica|type=transcript|length=1526bp
CAAAACTGAAAACTCTctcaacaaaaatattcttacaaaggAAAAGTGTA
TTATGTTCCCGAGCATATTACACATTGGAttctcaaaaaaaggtttttgc
tCTCTCTCTTCAATGTTTACTTTAAGCATCATGAATAATTTAGTAGTACC
TTCTATTATTCTAGAAAAGGCGAGggaaattttcattctattttttctGT
CTGTTTTTCTCTGTCTTTTATTAGAACTTTTTGATTGagttattcttttt
attttactatcTCGTATTTTCGGGAGAAGACAAACCGTGGACCCCTGATA
TGGACCACCAATATGGACCCCCTTTAAATGGCGAGAAAAGCATTGTGGGT
ATTTCCCAACATTGAATAGGTAGTTATTTGTGCTATATTAGTCGTCCTAT
ATAATATAAACATATTACAACAGTTATAGAGTTAGATACATGATACATTC
TGTTATTTAGACATAAATTCAGTTCGTTCAGAGTGATTTGTTCTATTGTT
GAAATGTTGACACAaagacaaaaacattcaaaatatttattataccgaaa
gtgatgtagatagtgtgaatggatataaaaagacaccaatcagaagctNN
CCGAGTTACATTGAAGAGTTACATTTAGGAGTGTTCGAGTTGCTAGTATA
ACTTCCTCtagaaaataaaagtttattaTCATTGGAGGGACTTTTTATGT
AGGCATCACccacaaaatcttttttcagagGCAAACGATATGCGTAATAT
TATGAAAGTTTGAGTTACTTGAGTTGTAACTCGGCTCTTCATGTCTCAAT
GTCAATCTATGGTTTGTTAAGccaaaaaacattgttcttgaGTATATCCA
TATTTATTTGGGCAGAGCAGctcaagtaaaaaatcaaactcaGCAGAATG
TTAAGTTCGAATAACTCGGAATAACTCGgaataaatcttaaaaatacTTA
TCGTACTCAATGTGATATTGGAAGTGCAAATAGACATAAATTATTTCAAA
CTAGAGTTGCTCAGAGCTGTTTTTGGTATTTCTTGCCGTTAGTGAGGGGG
TCCATTAGGGGTCCATATTggtggtccatattggggtccatattggggtt
cCATATCGGGGGTCCACGGTTTTTCTTCTCCCCgtattttcttataataa
aacatTAGTAACTCCAGATGGTTAAAAGCGATGCCGGCGGTTGTTTCAGT
GTGAtttccacactgtgacctagtatatATACCTTGGGAacacttatttt
ggcgggaactaatttggGCGTTGTGGGAACTTATTTGAGCTAAaaacctg
catattatatactaATCGATCAGAAACTTtcccaaaaatcaggtctctaa
aatcagacccttacagtgcagcaaaaatttggctgaaaatcgacccttac
agtgcaatttttctaaattttttgcccttttcagggcaaatttctcaaat
ttggcctgaaaatttggaatgtttccaaattttacagccttacagtgcat
tttttaccACTTGCTCAAAAATCGAC Run BLAST on NCBI transcript from alignment at sc0001975:20041..21566 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038955 ID=TCONS_00038955|Name=TCONS_00038955|organism=Clytia hemisphaerica|type=transcript|length=1526bp|location=Sequence derived from alignment at sc0001975:20041..21566 (Clytia hemisphaerica)
GTCGATTTTTGAGCAAGTggtaaaaaatgcactgtaaggctgtaaaattt
ggaaacattccaaattttcaggccaaatttgagaaatttgccctgaaaag
ggcaaaaaatttagaaaaattgcactgtaagggtcgattttcagccaaat
ttttgctgcactgtaagggtctgattttagagacctgatttttgggaAAG
TTTCTGATCGATtagtatataatatgcaggtttTTAGCTCAAATAAGTTC
CCACAACGCccaaattagttcccgccaaaataagtgtTCCCAAGGTATat
atactaggtcacagtgtggaaaTCACACTGAAACAACCGCCGGCATCGCT
TTTAACCATCTGGAGTTACTAatgttttattataagaaaatacGGGGAGA
AGAAAAACCGTGGACCCCCGATATGgaaccccaatatggaccccaatatg
gaccaccAATATGGACCCCTAATGGACCCCCTCACTAACGGCAAGAAATA
CCAAAAACAGCTCTGAGCAACTCTAGTTTGAAATAATTTATGTCTATTTG
CACTTCCAATATCACATTGAGTACGATAAgtatttttaagatttattcCG
AGTTATTCCGAGTTATTCGAACTTAACATTCTGCtgagtttgatttttta
cttgagCTGCTCTGCCCAAATAAATATGGATATACtcaagaacaatgttt
tttggCTTAACAAACCATAGATTGACATTGAGACATGAAGAGCCGAGTTA
CAACTCAAGTAACTCAAACTTTCATAATATTACGCATATCGTTTGCctct
gaaaaaagattttgtggGTGATGCCTACATAAAAAGTCCCTCCAATGAta
ataaacttttattttctaGAGGAAGTTATACTAGCAACTCGAACACTCCT
AAATGTAACTCTTCAATGTAACTCGGNNagcttctgattggtgtcttttt
atatccattcacactatctacatcactttcggtataataaatattttgaa
tgtttttgtcttTGTGTCAACATTTCAACAATAGAACAAATCACTCTGAA
CGAACTGAATTTATGTCTAAATAACAGAATGTATCATGTATCTAACTCTA
TAACTGTTGTAATATGTTTATATTATATAGGACGACTAATATAGCACAAA
TAACTACCTATTCAATGTTGGGAAATACCCACAATGCTTTTCTCGCCATT
TAAAGGGGGTCCATATTGGTGGTCCATATCAGGGGTCCACGGTTTGTCTT
CTCCCGAAAATACGAgatagtaaaataaaaagaataactCAATCAAAAAG
TTCTAATAAAAGACAGAGAAAAACAGACagaaaaaatagaatgaaaattt
ccCTCGCCTTTTCTAGAATAATAGAAGGTACTACTAAATTATTCATGATG
CTTAAAGTAAACATTGAAGAGAGAGagcaaaaacctttttttgagaaTCC
AATGTGTAATATGCTCGGGAACATAATACACTTTTcctttgtaagaatat
ttttgttgagAGAGTTTTCAGTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038955-exon-sc0001975-1491911889:20041..21566 | TCONS_00038955-exon-sc0001975-1491911889:20041..21566 | Clytia hemisphaerica | exon |
| TCONS_00038955-exon-sc0001975-1510915933:20041..21566 | TCONS_00038955-exon-sc0001975-1510915933:20041..21566 | Clytia hemisphaerica | exon |
| TCONS_00038955-exon-sc0001975-1575043694:20041..21566 | TCONS_00038955-exon-sc0001975-1575043694:20041..21566 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001975 | supercontig | sc0001975:20041..21566 . |
Blast
The following BLAST results are available for this feature:
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