TCONS_00038949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038949
Unique NameTCONS_00038949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length541

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038949 ID=TCONS_00038949|Name=TCONS_00038949|organism=Clytia hemisphaerica|type=transcript|length=541bp
ATATTTATAGAGATATTGCTGGAGATGTAGAAAATAGATTTGACACAAGC
AATTATTTTAAAGTTGATGATCAGAATAACGCTAAATATCGGCCACTTGA
GgtaggaaaaaataagaaagtgTTAGGTAAAATGAAAGATGAACTTGGTG
GTAAAATCATGACAGAATTTGTAGCTCTTAGACCAAAAATGTATGCGTAT
CAGAAGCTTGATGGAGGAGTTGACAAAAAGTGTAAAGGTACGAAAAAGTG
CGtagtgaaaaaaagaatttcatttgAAGACTATAACAAGGCGCCcaagg
gcgtgaaggcccagcttaAAAAATCTGTAATAGAGACAAAATACAAGGAT
ACTTGCTACAGTAGATTGATTAAAACGAATTGATTTATTAATcttaaaac
gaatttttcagttattcgaagcAAATTCTTATCCCCTTGGAgtttcgaat
aaccgggagtctactgttttttttttcacattgtagGGATCGATGATCAA
ACAACTGGACGAGCAAGAGTTCCTGAATATGTAAATAGCAA
Run BLAST on NCBI

protein sequence of TCONS_00038949-protein

>TCONS_00038949-protein ID=TCONS_00038949-protein|Name=TCONS_00038949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
IYRDIAGDVENRFDTSNYFKVDDQNNAKYRPLEVGKNKKVLGKMKDELGG
KIMTEFVALRPKMYAYQKLDGGVDKKCKGTKKCVVKKRISFEDYNKAPKG
VKAQLKKSVIETKYKDTCYSRLIKTN
Run BLAST on NCBI

transcript from alignment at sc0001974:6286..6826

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038949 ID=TCONS_00038949|Name=TCONS_00038949|organism=Clytia hemisphaerica|type=transcript|length=541bp|location=Sequence derived from alignment at sc0001974:6286..6826 (Clytia hemisphaerica)
TTGCTATTTACATATTCAGGAACTCTTGCTCGTCCAGTTGTTTGATCATC
GATCCctacaatgtgaaaaaaaaaacagtagactcccggttattcgaaac
TCCAAGGGGATAAGAATTTgcttcgaataactgaaaaattcgttttaagA
TTAATAAATCAATTCGTTTTAATCAATCTACTGTAGCAAGTATCCTTGTA
TTTTGTCTCTATTACAGATTTTTtaagctgggccttcacgcccttgGGCG
CCTTGTTATAGTCTTcaaatgaaattctttttttcactaCGCACTTTTTC
GTACCTTTACACTTTTTGTCAACTCCTCCATCAAGCTTCTGATACGCATA
CATTTTTGGTCTAAGAGCTACAAATTCTGTCATGATTTTACCACCAAGTT
CATCTTTCATTTTACCTAAcactttcttattttttcctacCTCAAGTGGC
CGATATTTAGCGTTATTCTGATCATCAACTTTAAAATAATTGCTTGTGTC
AAATCTATTTTCTACATCTCCAGCAATATCTCTATAAATAT

Coding sequence (CDS) from alignment at sc0001974:6286..6826

>TCONS_00038949 ID=TCONS_00038949|Name=TCONS_00038949|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0001974:6286..6826 (Clytia hemisphaerica)
TCAATTCGTTTTAATCAATCTACTGTAGCAAGTATCCTTGTATTTTGTCT
CTATTACAGATTTTTtaagctgggccttcacgcccttgGGCGCCTTGTTA
TAGTCTTcaaatgaaattctttttttcactaCGCACTTTTTCGTACCTTT
ACACTTTTTGTCAACTCCTCCATCAAGCTTCTGATACGCATACATTTTTG
GTCTAAGAGCTACAAATTCTGTCATGATTTTACCACCAAGTTCATCTTTC
ATTTTACCTAAcactttcttattttttcctacCTCAAGTGGCCGATATTT
AGCGTTATTCTGATCATCAACTTTAAAATAATTGCTTGTGTCAAATCTAT
TTTCTACATCTCCAGCAATATCTCTATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023413XLOC_023413Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038949-proteinTCONS_00038949-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038949-exon-sc0001974-1491911889:6286..6826TCONS_00038949-exon-sc0001974-1491911889:6286..6826Clytia hemisphaericaexon
TCONS_00038949-exon-sc0001974-1510915933:6286..6826TCONS_00038949-exon-sc0001974-1510915933:6286..6826Clytia hemisphaericaexon
TCONS_00038949-exon-sc0001974-1575043694:6286..6826TCONS_00038949-exon-sc0001974-1575043694:6286..6826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001974supercontigsc0001974:6286..6826 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09037	0.493509	0.725495	0.386993	1.9461	2.87423	2.79573	3.61356	2.40505	2.8132	2.28499	3.18017	2.44257	2.60933	2.38131	2.15258	3.30826	1.55146	1.09176	0.98736	2.49528	1.70939	0.735146	0.72848	1.78035	2.23757	1.51448	0.804196	0.635026	0.439716
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023211DNA_pol_palm_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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