TCONS_00038946 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038946
Unique NameTCONS_00038946
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038946 ID=TCONS_00038946|Name=TCONS_00038946|organism=Clytia hemisphaerica|type=transcript|length=706bp
ggcggacgcagtCACGAGCATCCAACTTGTTATCGAAAACAAAGCAGAAC
CATCAACCACATTTCGCAGCAAACTTGCTGAAATTTACAGCTCACCAAAA
GATGTAATCATAAATCTCCTTGCTCAAAAAATGGAGATTAAACAACTCGG
GCTACTCCGTGATCAACTATTCTTCATGTTTATGCAAGAATTCGAGGAGg
aaatcttattggcaaacGGATTCAACTTTGAAGAGGACAATCCCAAAACC
CTTTTGAAAGAACGTAAAAACACTCAAACTATTGCCACTGATATATACAG
CATTGGACTCAGCCTACACGAGGGCCAAATCACAAACAAACTAGCTTCAA
AGATCTTGAAACCATCTTCTGTCCACACAGACAACAATCCATTGCTCCAA
AACCATAGCAAAGCGATTCTCGAAAAACTACAGGAACTGATAACATCCAA
TAATAACGTAGTCAAAGAAAATGACAACATGAAAAAGGAGATCACAAACC
TAAACCGAAAAATGGATGAACAGAAAGAAcaattcatcaaaattataaat
gAACTCAAAAAGGACAGAAATCAAACCCCAAGCTCCTCTACATCGACCGA
AACCATCACACCACCCACTACCACTGGTGATCAGACAAACCTAATCATCC
CTACCAGGAGCAACAATCCGACCCCACCACTCAACAAACAGGCAACTGAA
CCACTA
Run BLAST on NCBI

protein sequence of TCONS_00038946-protein

>TCONS_00038946-protein ID=TCONS_00038946-protein|Name=TCONS_00038946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
ADAVTSIQLVIENKAEPSTTFRSKLAEIYSSPKDVIINLLAQKMEIKQLG
LLRDQLFFMFMQEFEEEILLANGFNFEEDNPKTLLKERKNTQTIATDIYS
IGLSLHEGQITNKLASKILKPSSVHTDNNPLLQNHSKAILEKLQELITSN
NNVVKENDNMKKEITNLNRKMDEQKEQFIKIINELKKDRNQTPSSSTSTE
TITPPTTTGDQTNLIIPTRSNNPTPPLNKQATEPL
Run BLAST on NCBI

transcript from alignment at sc0001973:32869..33574

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038946 ID=TCONS_00038946|Name=TCONS_00038946|organism=Clytia hemisphaerica|type=transcript|length=706bp|location=Sequence derived from alignment at sc0001973:32869..33574 (Clytia hemisphaerica)
TAGTGGTTCAGTTGCCTGTTTGTTGAGTGGTGGGGTCGGATTGTTGCTCC
TGGTAGGGATGATTAGGTTTGTCTGATCACCAGTGGTAGTGGGTGGTGTG
ATGGTTTCGGTCGATGTAGAGGAGCTTGGGGTTTGATTTCTGTCCTTTTT
GAGTTcatttataattttgatgaattgTTCTTTCTGTTCATCCATTTTTC
GGTTTAGGTTTGTGATCTCCTTTTTCATGTTGTCATTTTCTTTGACTACG
TTATTATTGGATGTTATCAGTTCCTGTAGTTTTTCGAGAATCGCTTTGCT
ATGGTTTTGGAGCAATGGATTGTTGTCTGTGTGGACAGAAGATGGTTTCA
AGATCTTTGAAGCTAGTTTGTTTGTGATTTGGCCCTCGTGTAGGCTGAGT
CCAATGCTGTATATATCAGTGGCAATAGTTTGAGTGTTTTTACGTTCTTT
CAAAAGGGTTTTGGGATTGTCCTCTTCAAAGTTGAATCCgtttgccaata
agatttcCTCCTCGAATTCTTGCATAAACATGAAGAATAGTTGATCACGG
AGTAGCCCGAGTTGTTTAATCTCCATTTTTTGAGCAAGGAGATTTATGAT
TACATCTTTTGGTGAGCTGTAAATTTCAGCAAGTTTGCTGCGAAATGTGG
TTGATGGTTCTGCTTTGTTTTCGATAACAAGTTGGATGCTCGTGactgcg
tccgcc

Coding sequence (CDS) from alignment at sc0001973:32869..33574

>TCONS_00038946 ID=TCONS_00038946|Name=TCONS_00038946|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at sc0001973:32869..33574 (Clytia hemisphaerica)
TAGTGGTTCAGTTGCCTGTTTGTTGAGTGGTGGGGTCGGATTGTTGCTCC
TGGTAGGGATGATTAGGTTTGTCTGATCACCAGTGGTAGTGGGTGGTGTG
ATGGTTTCGGTCGATGTAGAGGAGCTTGGGGTTTGATTTCTGTCCTTTTT
GAGTTcatttataattttgatgaattgTTCTTTCTGTTCATCCATTTTTC
GGTTTAGGTTTGTGATCTCCTTTTTCATGTTGTCATTTTCTTTGACTACG
TTATTATTGGATGTTATCAGTTCCTGTAGTTTTTCGAGAATCGCTTTGCT
ATGGTTTTGGAGCAATGGATTGTTGTCTGTGTGGACAGAAGATGGTTTCA
AGATCTTTGAAGCTAGTTTGTTTGTGATTTGGCCCTCGTGTAGGCTGAGT
CCAATGCTGTATATATCAGTGGCAATAGTTTGAGTGTTTTTACGTTCTTT
CAAAAGGGTTTTGGGATTGTCCTCTTCAAAGTTGAATCCgtttgccaata
agatttcCTCCTCGAATTCTTGCATAAACATGAAGAATAGTTGATCACGG
AGTAGCCCGAGTTGTTTAATCTCCATTTTTTGAGCAAGGAGATTTATGAT
TACATCTTTTGGTGAGCTGTAAATTTCAGCAAGTTTGCTGCGAAATGTGG
TTGATGGTTCTGCTTTGTTTTCGATAACAAGTTGGATGCTCGTGactgcg
tccgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023410XLOC_023410Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038946-exon-sc0001973-1491911889:32869..33574TCONS_00038946-exon-sc0001973-1491911889:32869..33574Clytia hemisphaericaexon
TCONS_00038946-exon-sc0001973-1510915933:32869..33574TCONS_00038946-exon-sc0001973-1510915933:32869..33574Clytia hemisphaericaexon
TCONS_00038946-exon-sc0001973-1575043694:32869..33574TCONS_00038946-exon-sc0001973-1575043694:32869..33574Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038946-proteinTCONS_00038946-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001973supercontigsc0001973:32869..33574 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.142768	0	0.484946	0.316296	1.15518	0.836769	0.458876	1.03103	0.721845	1.11765	1.0125	0.760659	0.427276	0.838157	0.243204	0.434993	0.375113	0.274628	0.0758825	0.158811	0.276072	0.908942	0.245542	0.074411	1.53283	1.84682	0.293644	0.208923	0.0792304	0.24217
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038946 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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