TCONS_00038945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038945
Unique NameTCONS_00038945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038945 ID=TCONS_00038945|Name=TCONS_00038945|organism=Clytia hemisphaerica|type=transcript|length=471bp
ACTGTGCTAGTAAAAGCTATACAGAGATAGAAAGCAATTTCCGGAAAGTC
GAACCAAAACAGTGGTGGAATCAGGATCTAACAAGGTGCAGAAATACACT
CAAACAAACCTTCAATATATGGAGAGACAATGGTTTCGAAAAGGATATGA
ATTCAGTGTATTATGCCCGATATGTGTTTGCCAGGAAAAGATTTCGTTAT
CTCGTGCGCCATTACAAAAACCAAGCGACAGCCAAATACTACGTAAACAT
TGATcggttaaagaaaataaacccTAGAAACTATTGGAAAAAGATTAGAC
TTAACAAAACATCAGCAGAAAAACTATACACAATCAACAACAAAACGTCA
ACAGAGGAGATCACAGAagaatttggccaccatttccaATCCGTTTTGAA
CGAACCTAGAGTCCAACATATTGACAATGAATACACAAACGCTCAATTAC
TGCGAATCCTACAGGAACTAC
Run BLAST on NCBI

protein sequence of TCONS_00038945-protein

>TCONS_00038945-protein ID=TCONS_00038945-protein|Name=TCONS_00038945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
CASKSYTEIESNFRKVEPKQWWNQDLTRCRNTLKQTFNIWRDNGFEKDMN
SVYYARYVFARKRFRYLVRHYKNQATAKYYVNIDRLKKINPRNYWKKIRL
NKTSAEKLYTINNKTSTEEITEEFGHHFQSVLNEPRVQHIDNEYTNAQLL
RILQEL
Run BLAST on NCBI

transcript from alignment at sc0001973:30836..31306

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038945 ID=TCONS_00038945|Name=TCONS_00038945|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at sc0001973:30836..31306 (Clytia hemisphaerica)
GTAGTTCCTGTAGGATTCGCAGTAATTGAGCGTTTGTGTATTCATTGTCA
ATATGTTGGACTCTAGGTTCGTTCAAAACGGATtggaaatggtggccaaa
ttctTCTGTGATCTCCTCTGTTGACGTTTTGTTGTTGATTGTGTATAGTT
TTTCTGCTGATGTTTTGTTAAGTCTAATCTTTTTCCAATAGTTTCTAggg
tttattttctttaaccgATCAATGTTTACGTAGTATTTGGCTGTCGCTTG
GTTTTTGTAATGGCGCACGAGATAACGAAATCTTTTCCTGGCAAACACAT
ATCGGGCATAATACACTGAATTCATATCCTTTTCGAAACCATTGTCTCTC
CATATATTGAAGGTTTGTTTGAGTGTATTTCTGCACCTTGTTAGATCCTG
ATTCCACCACTGTTTTGGTTCGACTTTCCGGAAATTGCTTTCTATCTCTG
TATAGCTTTTACTAGCACAGT

Coding sequence (CDS) from alignment at sc0001973:30836..31306

>TCONS_00038945 ID=TCONS_00038945|Name=TCONS_00038945|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0001973:30836..31306 (Clytia hemisphaerica)
TAGTTCCTGTAGGATTCGCAGTAATTGAGCGTTTGTGTATTCATTGTCAA
TATGTTGGACTCTAGGTTCGTTCAAAACGGATtggaaatggtggccaaat
tctTCTGTGATCTCCTCTGTTGACGTTTTGTTGTTGATTGTGTATAGTTT
TTCTGCTGATGTTTTGTTAAGTCTAATCTTTTTCCAATAGTTTCTAgggt
ttattttctttaaccgATCAATGTTTACGTAGTATTTGGCTGTCGCTTGG
TTTTTGTAATGGCGCACGAGATAACGAAATCTTTTCCTGGCAAACACATA
TCGGGCATAATACACTGAATTCATATCCTTTTCGAAACCATTGTCTCTCC
ATATATTGAAGGTTTGTTTGAGTGTATTTCTGCACCTTGTTAGATCCTGA
TTCCACCACTGTTTTGGTTCGACTTTCCGGAAATTGCTTTCTATCTCTGT
ATAGCTTTTACTAGCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023409XLOC_023409Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038945-proteinTCONS_00038945-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038945-exon-sc0001973-1491911889:30836..31306TCONS_00038945-exon-sc0001973-1491911889:30836..31306Clytia hemisphaericaexon
TCONS_00038945-exon-sc0001973-1510915933:30836..31306TCONS_00038945-exon-sc0001973-1510915933:30836..31306Clytia hemisphaericaexon
TCONS_00038945-exon-sc0001973-1575043694:30836..31306TCONS_00038945-exon-sc0001973-1575043694:30836..31306Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001973supercontigsc0001973:30836..31306 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0537849	1.64273	1.02356	0.664131	1.46078	0.0808448	1.44643	0.274379	0.726586	0.813675	0.28373	0.0931229	0.401162	0	0.278546	0.417765	0.151891	0	0.26862	0.510643	0.609868	1.25338	1.40157	0.211789	0.358113	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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