TCONS_00038944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038944
Unique NameTCONS_00038944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038944 ID=TCONS_00038944|Name=TCONS_00038944|organism=Clytia hemisphaerica|type=transcript|length=356bp
TGTAAATGTCTAGCTTTGGAAGCCAAATCATAttccttttttctgttttg
aattATATACAAAGTTCAGAATATCAAATATCATAGAAACTCCTACTTTT
CGAATTCCCTAATTTGAGATAATTACTTGCCAATACTggccaatacacgt
ttttttataaggaaccttaacttcgCTCCGAGCCTGAAGTTCCTTATTTg
tccagagaatttcagcctcaaagttccttatcgagttccttattaaCTTA
GCTGCTTATATTGGATTAGCTAAGTATGTAAGttatgttttttaaatata
ccAATGGACTAAAGTACAGAAAAAGACGTTTATTGAATGTTGTTTCGTCA
ATATTT
Run BLAST on NCBI

transcript from alignment at sc0001973:17409..17764

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038944 ID=TCONS_00038944|Name=TCONS_00038944|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at sc0001973:17409..17764 (Clytia hemisphaerica)
AAATATTGACGAAACAACATTCAATAAACGTCTTTTTCTGTACTTTAGTC
CATTggtatatttaaaaaacataaCTTACATACTTAGCTAATCCAATATA
AGCAGCTAAGttaataaggaactcgataaggaactttgaggctgaaattc
tctggacAAATAAGGAACTTCAGGCTCGGAGcgaagttaaggttccttat
aaaaaaacgtgtattggccAGTATTGGCAAGTAATTATCTCAAATTAGGG
AATTCGAAAAGTAGGAGTTTCTATGATATTTGATATTCTGAACTTTGTAT
ATaattcaaaacagaaaaaaggaaTATGATTTGGCTTCCAAAGCTAGACA
TTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023408XLOC_023408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038944-exon-sc0001973-1491911889:17409..17764TCONS_00038944-exon-sc0001973-1491911889:17409..17764Clytia hemisphaericaexon
TCONS_00038944-exon-sc0001973-1510915933:17409..17764TCONS_00038944-exon-sc0001973-1510915933:17409..17764Clytia hemisphaericaexon
TCONS_00038944-exon-sc0001973-1575043694:17409..17764TCONS_00038944-exon-sc0001973-1575043694:17409..17764Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001973supercontigsc0001973:17409..17764 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.96538	0	1.64207	4.03123	0	1.03433	0.310727	0	0.203377	1.03655	0.489451	1.12588	1.61493	0.833461	0.413088	0.896562	2.00755	0.374899	1.03797	0.818753	0.233896	0.68508	0	1.01489	0.518243	0	0.336231	0.373684	0.277986	0.561997
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top