TCONS_00038942 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038942
Unique NameTCONS_00038942
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038942 ID=TCONS_00038942|Name=TCONS_00038942|organism=Clytia hemisphaerica|type=transcript|length=688bp
cTTGTATCTTCAGAACGCTTGCAAAACTAATCAACTAATAagtaattata
attttcatagaaaaatgtttattaagatactaaatattttttctggTGTA
TACTAATTGTTTAATGTATTATGTTTTAGTCTTAACAAATGGCAATGTAA
AATAGTTtagtaaaaagtaaaatcaagattatgtatctttcttttttggt
atttttcaatAATAATTTCTTAGGTTTATTTAGGATTTATAAAATTTAAT
TAGTTAGAATTCTGTTAGTTTGATAAAAATACTTAgagtaaaaacctttt
ttaaaggctttgctctaaagattttcaaaacagGTTCTATATGATTCTTC
ATGGGGTAGTGAAATTTTTAACCGAGGATGACAAAtattttttcggattt
ttttctttatatatttaagtttttaGTTATTTTATTAGTTCCTAGGTCTT
CAATTTGTAGAATACTCTTAACATTATGAATTTAATTCGGAGGTAAACTC
ACTCAGGTTTTTCTTTAAGAATATTCGATTCTTTTAAGCTAAAGACGAAG
ATTATTaagttttcctttgttttctacTAAAAATAGCAGCTCTAGAGAGT
GTTAGGGGGGCTtatatttgcatttttttctggattacatcagtattttt
tattttgttatgtATTTATTAtgttctttcaatttttc
Run BLAST on NCBI

transcript from alignment at sc0001973:7622..8309

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038942 ID=TCONS_00038942|Name=TCONS_00038942|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at sc0001973:7622..8309 (Clytia hemisphaerica)
gaaaaattgaaagaacaTAATAAATacataacaaaataaaaaatactgat
gtaatccagaaaaaaatgcaaatataAGCCCCCCTAACACTCTCTAGAGC
TGCTATTTTTAgtagaaaacaaaggaaaacttAATAATCTTCGTCTTTAG
CTTAAAAGAATCGAATATTCTTAAAGAAAAACCTGAGTGAGTTTACCTCC
GAATTAAATTCATAATGTTAAGAGTATTCTACAAATTGAAGACCTAGGAA
CTAATAAAATAACtaaaaacttaaatatataaagaaaaaaatccgaaaaa
ataTTTGTCATCCTCGGTTAAAAATTTCACTACCCCATGAAGAATCATAT
AGAACctgttttgaaaatctttagagcaaagcctttaaaaaaggttttta
ctcTAAGTATTTTTATCAAACTAACAGAATTCTAACTAATTAAATTTTAT
AAATCCTAAATAAACCTAAGAAATTATTattgaaaaataccaaaaaagaa
agatacataatcttgattttactttttactaAACTATTTTACATTGCCAT
TTGTTAAGACTAAAACATAATACATTAAACAATTAGTATACAccagaaaa
aatatttagtatcttaataaacatttttctatgaaaattataattactTA
TTAGTTGATTAGTTTTGCAAGCGTTCTGAAGATACAAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023406XLOC_023406Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038942-exon-sc0001973-1491911889:7622..8309TCONS_00038942-exon-sc0001973-1491911889:7622..8309Clytia hemisphaericaexon
TCONS_00038942-exon-sc0001973-1510915933:7622..8309TCONS_00038942-exon-sc0001973-1510915933:7622..8309Clytia hemisphaericaexon
TCONS_00038942-exon-sc0001973-1575043694:7622..8309TCONS_00038942-exon-sc0001973-1575043694:7622..8309Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001973supercontigsc0001973:7622..8309 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01074	1.86433	1.46775	0.341632	6.94706	4.12081	7.33849	7.50706	11.236	10.4692	8.46731	6.11834	4.1835	2.95273	2.00675	2.45655	2.92818	3.67979	2.64336	2.82483	17.1676	18.8885	8.88041	10.7376	2.11129	1.88458	9.64301	5.95496	9.77347	4.793
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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