TCONS_00038941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038941
Unique NameTCONS_00038941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038941 ID=TCONS_00038941|Name=TCONS_00038941|organism=Clytia hemisphaerica|type=transcript|length=1574bp
tgcaaaatcaaaacaaacaaagtcTGGAAGATTGATTTAGAATAAAAATG
GAGGATATTGATTATAATGGGTGATTATCTCACAAGGCCAGGATGGAAGT
ATAGTTATTGAAGTCGTAATTAAACTATCTTATATCTTATATACAGAATT
GAAGATCCAAGAGAAGTCTTTGAGAAGAACCAGTGTTGTTTCTTAGCGTA
GAAAGGAAAGGGATAAAATTAAGTTAAAATTTGGTAGATTAGCTAGATGA
GTTAAATGATAAAGGGATTTAAGAAGCTAAGATTCAGCGTTTGATTGACT
CCTGAAGGATTTCTCTGAATCGCAATCTATTTTCATACTTGTGCCAGTTT
TCGACACACAGAGGGAGTTGATCCAAGTCTTCATCAGGCATATTAGAGTC
AATCAACTTGATtgattgttttttaataaagctTTCGAATAAAtctattt
catatttctcaCATGTCTTGTTGAGGTCTTCGATTGTCGAGAAGCCTCTA
TCATCTTTACCCAGTGTGGTGACGTATAGGGCGTAGTGTCTAGTGTTGTT
GTTTTCGATAAGTTCCTTTAGGAGACTGAGTTTTTTATTGTCCAGGATTT
GTGAGATGTCNTGAGGTCTTCGATTGTCGAGAAGCCTCTATCATCTTTAC
CCAGTGTGGTGACGTATAGGGCGTAGTGTCTAGTGTTGTTGTTTTCGATA
AGTTCCTTTAGGAGACTGAGTTTTTTATTGTCCAGGATTTGTGTGATGTC
TGCAATATTGTAGAGTTTGTTGATAAggtttttcgaatgtttatagACAC
CGAAGAGCGATTCTAGTAGGTGATTAGGTGATAGTCTTCTAACCACGGCT
GAAATAAGTGAGGATGTAACGGCCCACATTTCTTGTAAACGATATTCATG
CATTTAAGGGTATTTTGTGGTAGTACAAAGTTATTTTCTAAACGAAGAAA
TGGAAGCGATAGGTCACTTTTTCCCGATATTATAAATTGTGTTTTCAGTT
CATTAAATTTAAGATTATGATTGATACCGTAAGTTGCACATTTGTCGAGA
AGAGTTTGCAAGTTTTATAGAGTTTGACTCATCAGGACCAGGTCATCAGC
AAATGCTATAATGGATGTATTTGTACCATCTGGTAGGTGAGTCCCGATCT
GAAGGTTTAAACTTCTGCAATGAGAGTCTCTATATATTTATTGTAAAGAT
ATGGAGAAAGGATCGATCCCTGTTTAGCCCCCTGTGTTAGGTTGAAGGGT
TCTGATTCAACGTTTCCATAAACAACAGTCGATTTGCTTTTGAGGTATGA
GTCAATGAGAAATTTGAGAATTGGTTTTGGTATTGATTCGTTATCTCcta
gtttttcaaaaagtttaagcCAATTACAGCTGTCGAAACATTGGAAGCAT
CTAAGCTGCAAATGTAAACAGGTGAGTCTTTACTGCTATAAAACCTGATA
GTGTTGGATTAAGATTTCTGCATGAGTGGTTGACGATTTTTGAGTGAATC
CAAACTGTGATTGTGATGGCGATTTTAAGAATAAACATTTTTCTAGAATC
TTTGTTAGGATTGGTACGAGACTG
Run BLAST on NCBI

transcript from alignment at sc0001973:29138..30776+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038941 ID=TCONS_00038941|Name=TCONS_00038941|organism=Clytia hemisphaerica|type=transcript|length=1639bp|location=Sequence derived from alignment at sc0001973:29138..30776+ (Clytia hemisphaerica)
tgcaaaatcaaaacaaacaaagtcTGGAAGATTGATTTAGAATAAAAATG
GAGGATATTGATTATAATGGGTGATTATCTCACAAGGCCAGGATGGAAGT
ATAGTTATTGAAGTCGTAATTAAACTATCTTATATCTTATATACAGAATT
GAAGATCCAAGAGAAGTCTTTGAGAAGAACCAGTGTTGTTTCTTAGCGTA
GAAAGGAAAGGGATAAAATTAAGTTAAAATTTGGTAGATTAGCTAGATGA
GTTAAATGATAAAGGGATTTAAGAAGCTAAGATTCAGCGTTTGATTGACT
CCTGAAGGATTTCTCTGAATCGCAATCTATTTTCATACTTGTGCCAGTTT
TCGACACACAGAGGGAGTTGATCCAAGTCTTCATCAGGCATATTAGAGTC
AATCAACTTGATtgattgttttttaataaagctTTCGAATAAAtctattt
catatttctcaCATGTCTTGTTGAGGTCTTCGATTGTCGAGAAGCCTCTA
TCATCTTTACCCAGTGTGGTGACGTATAGGGCGTAGTGTCTAGTGTTGTT
GTTTTCGATAAGTTCCTTTAGGAGACTGAGTTTTTTATTGTCCAGGATTT
GTGAGATGTCNTGAGGTCTTCGATTGTCGAGAAGCCTCTATCATCTTTAC
CCAGTGTGGTGACGTATAGGGCGTAGTGTCTAGTGTTGTTGTTTTCGATA
AGTTCCTTTAGGAGACTGAGTTTTTTATTGTCCAGGATTTGTGTGATGTC
TGCAATATTGTAGAGTTTGTTGATAAggtttttcgaatgtttatagACAC
CGAAGAGCGATTCTAGTAGGTGATTAGGTGATAGTCTTCTAACCACGGCT
GAAATAAGTGAGGATGTAACGGCCCACATTTCTTGTAAACGATATTCATG
CATTTAAGGGTATTTTGTGGTAGTACAAAGTTATTTTCTAAACGAAGAAA
TGGAAGCGATAGGTCACTTTTTCCCGATATTATAAATTGTGTTTTCAGTT
CATTAAATTTAAGATTATGATTGATACCGTAAGTTGCACATTTGTCGAGA
AGAGTTTGCAAGTTTTATAGAGTTTGACTCATCAGGACCAGGTCATCAGC
AAATGCTATAATGGATGTATTTGTACCATCTGGTAGGTGAGTCCCGATCT
GAAGGTTTAAACTTCTGCAATGAGAGTCTCTATATATTTATTGTAAAGAT
ATGGAGAAAGGATCGATCCCTGTTTAGCCCCCTGTGTTAGGTTGAAGGGT
TCTGATTCAACGTTTCCATAAACAACAGTCGATTTGCTTTTGAGGTATGA
GTCAATGAGAAATTTGAGAATTGGTTTTGGTATTGATTCGTTATCTCcta
gtttttcaaaaagtttaagcCAATTACAGCTGTCGAAAGCCTTGGAAGCA
TCCAAGCTGCAAATGTAAACAGGTGAGTCTTTACTGTTATAAAACCTGAT
ANGCATTGGAAGCATCTAAGCTGCAAATGTAAACAGGTGAGTCTTTACTG
CTATAAAACCTGATAGTGTTGGATTAAGATTTCTGCATGAGTGGTTGACG
ATTTTTGAGTGAATCCAAACTGTGATTGTGATGGCGATTTTAAGAATAAA
CATTTTTCTAGAATCTTTGTTAGGATTGGTACGAGACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023405XLOC_023405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038941-exon-sc0001973-1491911889:29138..30525TCONS_00038941-exon-sc0001973-1491911889:29138..30525Clytia hemisphaericaexon
TCONS_00038941-exon-sc0001973-1510915933:29138..30525TCONS_00038941-exon-sc0001973-1510915933:29138..30525Clytia hemisphaericaexon
TCONS_00038941-exon-sc0001973-1575043694:29138..30525TCONS_00038941-exon-sc0001973-1575043694:29138..30525Clytia hemisphaericaexon
TCONS_00038941-exon-sc0001973-1491911889:30591..30776TCONS_00038941-exon-sc0001973-1491911889:30591..30776Clytia hemisphaericaexon
TCONS_00038941-exon-sc0001973-1510915933:30591..30776TCONS_00038941-exon-sc0001973-1510915933:30591..30776Clytia hemisphaericaexon
TCONS_00038941-exon-sc0001973-1575043694:30591..30776TCONS_00038941-exon-sc0001973-1575043694:30591..30776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001973supercontigsc0001973:29138..30776 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.180046	0	0.0442685	0.0553163	0.442093	0.378008	0.980271	1.02822	0.453181	0.484851	0.728641	0.356272	0.382881	0.361083	0.0816049	0.352339	0.18925	0.189863	0.153159	0.11487	0.423345	0.587273	0	0.0622307	1.08279	1.75446	0.210129	0	0.0809671	0.0768879
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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