TCONS_00038936 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038936
Unique NameTCONS_00038936
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038936 ID=TCONS_00038936|Name=TCONS_00038936|organism=Clytia hemisphaerica|type=transcript|length=796bp
gtttttgaaaatgtgatgcCATGTAAGTGTAATCAAACAACAAAATCAAG
GGAAAAAAACTTTCACCCAAAGTAATTTTCCATGAAATGAAAATGTGATC
AAAATTCGTCACTCCCCCATCCATGGAAAATTACACGGTCAACTTCTTTT
CCAAAATCTTTACAGCCCGAGCATAATAAAGTAATTTAGAAGGccatttt
ctacattttttttacattgaaaattatcattttataAGTAGGGCCTagag
ttttgttttgaaaggagGAGGGAAAAACACCAAGTCCCCAAAAtgaacaa
agaagaaaaaactctttcttttgaGAGACGGGAGAGAATTCTTCGCAGTC
ACTCATTAGGGAtacagtgatttttttctttcacgaCGCCTTCCTTATTT
TCAAACCCAATAGAAACAAACTTAATGAAATTTGAAGAAGAATACAAAAC
AAGCTtgtaaaatatttccaaaattcCTTTCTACTTTTGAGAAGCCAGTC
CCGTATGATTCTTGTATTAACAGAGAAATACACATTGCAAAAATATAAAC
GACGAAAACTTGACTATCAAATTtgaccttttgaaaaaaaaccctCACCA
TAATACCAAAGCTACACGAAAATTATTCTTATCATGGATCCGTGGACCAT
TTATCTTTagaataataaaatattgatatttgaaataaatatatttacag
aataaaaattcaaattttttcagatCTATAAATATTTAGGCATCTTTTCA
TCTGttgaatgaagatgaaaaagccGAGTCAACGGGTTCATTTCAT
Run BLAST on NCBI

transcript from alignment at sc0001969:18393..19188

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038936 ID=TCONS_00038936|Name=TCONS_00038936|organism=Clytia hemisphaerica|type=transcript|length=796bp|location=Sequence derived from alignment at sc0001969:18393..19188 (Clytia hemisphaerica)
ATGAAATGAACCCGTTGACTCggctttttcatcttcattcaaCAGATGAA
AAGATGCCTAAATATTTATAGatctgaaaaaatttgaatttttattctgt
aaatatatttatttcaaatatcaatattttattattctAAAGATAAATGG
TCCACGGATCCATGATAAGAATAATTTTCGTGTAGCTTTGGTATTATGGT
GagggttttttttcaaaaggtcaAATTTGATAGTCAAGTTTTCGTCGTTT
ATATTTTTGCAATGTGTATTTCTCTGTTAATACAAGAATCATACGGGACT
GGCTTCTCAAAAGTAGAAAGgaattttggaaatattttacaAGCTTGTTT
TGTATTCTTCTTCAAATTTCATTAAGTTTGTTTCTATTGGGTTTGAAAAT
AAGGAAGGCGtcgtgaaagaaaaaaatcactgtaTCCCTAATGAGTGACT
GCGAAGAATTCTCTCCCGTCTCtcaaaagaaagagttttttcttctttgt
tcaTTTTGGGGACTTGGTGTTTTTCCCTCctcctttcaaaacaaaactct
AGGCCCTACTtataaaatgataattttcaatgtaaaaaaaatgtagaaaa
tggCCTTCTAAATTACTTTATTATGCTCGGGCTGTAAAGATTTTGGAAAA
GAAGTTGACCGTGTAATTTTCCATGGATGGGGGAGTGACGAATTTTGATC
ACATTTTCATTTCATGGAAAATTACTTTGGGTGAAAGTTTTTTTCCCTTG
ATTTTGTTGTTTGATTACACTTACATGgcatcacattttcaaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023400XLOC_023400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038936-exon-sc0001969-1491911889:18393..19188TCONS_00038936-exon-sc0001969-1491911889:18393..19188Clytia hemisphaericaexon
TCONS_00038936-exon-sc0001969-1510915933:18393..19188TCONS_00038936-exon-sc0001969-1510915933:18393..19188Clytia hemisphaericaexon
TCONS_00038936-exon-sc0001969-1575043694:18393..19188TCONS_00038936-exon-sc0001969-1575043694:18393..19188Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001969supercontigsc0001969:18393..19188 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0606696	0	0	0.326022	0.0644067	1.47638	1.45491	0.468031	0.513956	0.0612329	0.241513	0.0803923	0	0.308874	0.224061	0	0	0	0.067231	0.655209	0.352478	0.485088	0.57523	0.259563	0.17374	0.429319	0.278375	3.97615	2.09773
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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