TCONS_00038935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038935
Unique NameTCONS_00038935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038935 ID=TCONS_00038935|Name=TCONS_00038935|organism=Clytia hemisphaerica|type=transcript|length=297bp
gaatcatgggtaatcaccGCTTCGGTAACCGTTATTGAAGCaaagtcctg
attacccatgatacATTTCGACCGTGAGATTGGCCAATAAAAAAAGGACA
GGGAAAACTTCACAATAGCACCAGGTTATAAATATCACTGATTTCAGCTT
GAAGGTAGATATTGACTTCTACATTCATCTCTTGAaaccaaaatcataaa
atctctcaaaatgcGACTATTAATGCgtaccatgatgaagtttcaCTGTA
acggtgttacctaattgtttacgcccttatttttgcgaaaacccgca
Run BLAST on NCBI

transcript from alignment at sc0001969:10543..10839

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038935 ID=TCONS_00038935|Name=TCONS_00038935|organism=Clytia hemisphaerica|type=transcript|length=297bp|location=Sequence derived from alignment at sc0001969:10543..10839 (Clytia hemisphaerica)
tgcgggttttcgcaaaaataagggcgtaaacaattaggtaacaccgtTAC
AGtgaaacttcatcatggtacGCATTAATAGTCgcattttgagagatttt
atgattttggttTCAAGAGATGAATGTAGAAGTCAATATCTACCTTCAAG
CTGAAATCAGTGATATTTATAACCTGGTGCTATTGTGAAGTTTTCCCTGT
CCTTTTTTTATTGGCCAATCTCACGGTCGAAATgtatcatgggtaatcag
gactttGCTTCAATAACGGTTACCGAAGCggtgattacccatgattc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023399XLOC_023399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038935-exon-sc0001969-1491911889:10543..10839TCONS_00038935-exon-sc0001969-1491911889:10543..10839Clytia hemisphaericaexon
TCONS_00038935-exon-sc0001969-1510915933:10543..10839TCONS_00038935-exon-sc0001969-1510915933:10543..10839Clytia hemisphaericaexon
TCONS_00038935-exon-sc0001969-1575043694:10543..10839TCONS_00038935-exon-sc0001969-1575043694:10543..10839Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001969supercontigsc0001969:10543..10839 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.392381	0	0	0	0	5.17319	2.90585	2.03445	1.26	0	1.07192	1.07043	1.11166	0	0.490395	0	0.309605	2.56642	0.447595	1.55616	0.569282	0.461358	2.51665	1.29604	0	0.551739	0.588831	4.91268	2.73013
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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