TCONS_00038934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038934
Unique NameTCONS_00038934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038934 ID=TCONS_00038934|Name=TCONS_00038934|organism=Clytia hemisphaerica|type=transcript|length=626bp
NcgctgggagttaatcaccatggcaataatttcaaaacgaggtaagTGTT
GTTCGTGAcgtgatttatgaaaaggtcttttATTCGTTATCTTTTCCAAA
TAATTTTCGCATTTTAAGTTCAAATGGTACCCGTCTGTTTgttgaagtga
aaaaaaagcAGCAAAAAACAGTTTGGTAACTCTCTAGCGGCCTAGAGTCT
TTagcttatcttttcaacggtataaaACTTGTAAGATTTAAAGCGTAAAT
ATCTATTCTGATCTTCGAGNAAAAAACAGTTTGGTAACTCTCTAGCGGCC
TAGAGTCTTTagcttatcttttcaacggtataaaACTTGTAACATTTAAA
GCATAAATATCTATTCTTATCTTCGAGgaaataaaactgaaaatttgtgA
GGGGCACAAGTCCCAAACAAAAGCAATTTGAGCATCATATTTTAAGGAAA
ATCTCTCTCCAAATGATTAGTTCTGAAGTTTAGGCTGTgctattttgcat
tttccagTTTTAAATATACAACTGCAGTTTTATTATCGTAAGTAATGTTA
GCATTTCATCTGGTTGCCATAGACACAAGAACTAATAAATTGCTCTTAAG
AGTCAGATTTAACAAACGGTATTAAA
Run BLAST on NCBI

transcript from alignment at sc0001969:4686..5311

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038934 ID=TCONS_00038934|Name=TCONS_00038934|organism=Clytia hemisphaerica|type=transcript|length=626bp|location=Sequence derived from alignment at sc0001969:4686..5311 (Clytia hemisphaerica)
TTTAATACCGTTTGTTAAATCTGACTCTTAAGAGCAATTTATTAGTTCTT
GTGTCTATGGCAACCAGATGAAATGCTAACATTACTTACGATAATAAAAC
TGCAGTTGTATATTTAAAActggaaaatgcaaaatagcACAGCCTAAACT
TCAGAACTAATCATTTGGAGAGAGATTTTCCTTAAAATATGATGCTCAAA
TTGCTTTTGTTTGGGACTTGTGCCCCTcacaaattttcagttttatttcC
TCGAAGATAAGAATAGATATTTATGCTTTAAATGTTACAAGTtttatacc
gttgaaaagataagctAAAGACTCTAGGCCGCTAGAGAGTTACCAAACTG
TTTTTTNCTCGAAGATCAGAATAGATATTTACGCTTTAAATCTTACAAGT
tttataccgttgaaaagataagctAAAGACTCTAGGCCGCTAGAGAGTTA
CCAAACTGTTTTTTGCTgcttttttttcacttcaacAAACAGACGGGTAC
CATTTGAACTTAAAATGCGAAAATTATTTGGAAAAGATAACGAATaaaag
accttttcataaatcacgTCACGAACAACActtacctcgttttgaaatta
ttgccatggtgattaactcccagcgN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023398XLOC_023398Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038934-exon-sc0001969-1491911889:4686..5311TCONS_00038934-exon-sc0001969-1491911889:4686..5311Clytia hemisphaericaexon
TCONS_00038934-exon-sc0001969-1510915933:4686..5311TCONS_00038934-exon-sc0001969-1510915933:4686..5311Clytia hemisphaericaexon
TCONS_00038934-exon-sc0001969-1575043694:4686..5311TCONS_00038934-exon-sc0001969-1575043694:4686..5311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001969supercontigsc0001969:4686..5311 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0964153	0.0946318	0.120209	0.0907659	0.556708	0.437181	0.385791	0.420364	0	0.122618	0.169897	0	0.264254	0.0779693	0	0	0.0905754	0.0948092	0.727718	0.381935	2.14016	4.05297	0.659875	0.533821	1.69961	1.0339	3.62196	2.04933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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