TCONS_00038927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038927
Unique NameTCONS_00038927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038927 ID=TCONS_00038927|Name=TCONS_00038927|organism=Clytia hemisphaerica|type=transcript|length=439bp
aaaaactaaaaatatggAAGAAATTACATTAGAGGACCTCGAAAATAGCG
AATTTGAAGAATTTCCAAGAGAACATAATAATTCAAACGTGatGAATATT
ACCTTAGAAGAATTGGATGCGTCAGAGTTCACTCTAGAAGAGATCGAGAA
TGGAATTAATGAACAAGTTGAGACCAGTACAAATGAAACGATTGAAATTG
AAACAGATGAAACAGAAGAAATCGAAACTGATGAGgagATGAGCCAAACC
ATTTTCCAGCCAGTTCAGGCTACTCCGGAACCAGAGGTTATTGAAGTATC
ATCAGAAGAAGATGTATTAAGTCCAGAGACATCAGAAAGTGACGACCAAG
AAGAGGATTTAACTTTTCTTGGCTCAGATTCAACACAAACAAATGATCAG
GTAACAGAATGTTGTATTTGTATGCGTTCAATAAAATCC
Run BLAST on NCBI

protein sequence of TCONS_00038927-protein

>TCONS_00038927-protein ID=TCONS_00038927-protein|Name=TCONS_00038927-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
KTKNMEEITLEDLENSEFEEFPREHNNSNVMNITLEELDASEFTLEEIEN
GINEQVETSTNETIEIETDETEEIETDEEMSQTIFQPVQATPEPEVIEVS
SEEDVLSPETSESDDQEEDLTFLGSDSTQTNDQVTECCICMRSIKS
Run BLAST on NCBI

transcript from alignment at sc0001965:18665..22729-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038927 ID=TCONS_00038927|Name=TCONS_00038927|organism=Clytia hemisphaerica|type=transcript|length=4065bp|location=Sequence derived from alignment at sc0001965:18665..22729- (Clytia hemisphaerica)
AAAAACTAAAAATATGGAAGAAATTACATTAGAGGACCTCGAAAATAGCG
AATTTGAAGAATTTCCAAGAGAACATAATAATTCAAACGTGGTTTGTAAA
TGTTATTTTATATATAATGTAATGGGGTTAATTTCAATATCAACAGTTTT
GCATTGACTTGATTTTAATAAAGTGAAAACAATTTGGAGATGATAATTTT
CAGTTGTTGTGTAGCTTTTTGTTGCCAAACTATGCATACTGGTTGTTGAA
AACACATTTAACTTTAAGTGTTATTTTGATGTCAATAAACATTTGAAAAG
TTGCTTTTTGATTTCCATTAGGGACTTAATTTTGCAGATAGGTACACCCG
TATCGGCAAAATTCTGCAAAGTTAATCATGACTTTATTGAAGAATATTAT
TCTTCTAGCAAAGCATCTGTCAGCAAGACATTCAAGGCCAAGTTTTCTTT
CCTGAGGCATAAGATCATTATATAATAATTGCAGCATATCAAGATTTGGT
AATTAAAAATTTGTAAATGGTTAGGAGGGATATCCTAGGAACACGCTTTT
GAAGTCCGTTAATAAGAACAATAACTTTATTGCCATTTTTATTTTTTACA
TTAGATGAATATTACCTTAGAAGAATTGGATGCGTCAGAGTTCACTCTAG
AAGAGATCGAGAATGGAGTGAGTGTTTTAAAAATCTATAACCATGTAAAG
TTAATCCAAGAAAGAAAGCCTTAAATAGAACACGAGTGCGGACCAATCAG
CATAGATGGTAATAGCAAGTTTATTTTTAAAAAATTGTTTCTTATTTGTT
TTTCTACTTAGATTAATGAACAAGTTGAGACCAGTACAAATGAAACGATT
GAAATTGAAACAGATGAAACAGAAGAAATCGAAACTGATGAGGTAAAGTA
ACTTATCCTTCAAGTTACAATTTTAATTTTTCTGTTATATTTTAAACCTG
TGCATTACCTGCTTACATACTTGATTAATTAATTTTTGTTTCAAGATATA
TTTGACAAGTTTATTACAAATACTTAAATGTTTCTTTTGAAAAGGAGATG
AGCCAAACCATTTTCCAGCCAGTTCAGGCTACTCCGGAACCAGAGGTATT
TTTGTCACATTCTATACTACCTATCATTAAAAGTCCATATGAAAGCGTGA
TTGGGTAGTCTGTGATAGAGGGCACTTGCATATGGACATAACATTAATTA
TTGTTTAAAAAAATGCAATCGCTTTATAAAATAATTATTTTTCCCCGAAA
AGTATTTTCAATCTGATTTAAATCAAAGTATTATTTTTTATGGATATTTG
AATTCAAGATATTACTTTTAAATGCACATCCTTATTAAGATAAATTTCTC
TTCTAACTTTGTACCTTGAAATAGTGCAACATGACCTAGACATACTTTGT
CGCATTGTGGTAAGGTTGCAAGAAACATGTATATAAATTGTGATTTTTTT
ATTGTCTGTGTACTTTGGATCTTGCATCTGGTGCATCCGGTGCAGATGGG
TGACTATGGTTTAAAGTAGATTCCTTTTGGAAATGGTGCAATGAATACAT
GTCAGTTTCTTTAATGGTCAGATAGAGGTGCTTTATGATGTTTTCAAACA
AGGAAAACTTTAGATTGTCACTTAATCTACCATACTATGCTCCCTTTTAC
TGTTGTAGTACTTTGAAAAAGGCCTACTTAAAACCCAATATTTCAGACAA
TACATTTATTAGCAACGGAGATTAGTGTAAAAGTGTTTCTTGTCCTGAAA
CTGTGCCTCTTTAATCAATTCTTTTTATTTCTTTTGAAAAATGAAATTGT
GACATGATTATTTGCTATAGGTTATTGAAGTATCATCAGAAGAAGATGTA
TTAAGTCCAGAGACATCAGAAAGTGACGACCAAGAAGAGGTTTTTTATAA
ATTACTTTAATCTTTTGAAATTTGGCTACTCTTAGGTGCCAAATAAACGG
GGGAGGTTGGAAAAAAATCGAAAAATTAACAAGCGGGGCGCCCGTTTATT
TGGCACCTAAGAGTACATATCTTATTACAAAACTTTTCTCCTGTGCCGCC
TCTTTATACTTAACCAATTTACTATCTAAAATGCTCTGACTCGTGATCTT
TAAATAGTGGGATAACTTTTATAGTTAAAAAAGGTCCACACGATTGCCCA
TGGGAGTGTCTCACGAGTTTTGGGAAAAAAATCTGCAAAAAACAAGATTT
TAGGGGTCAATCATGCTTCATTGATGTTTAAATGATGATATAATACTTCG
GATCATTTTTTCTTCCTAATGATAATGCACACTCACAGTGAGCAAAATTT
ATGAACATAATTTTGAAGGCTTGAAGAGCAAGATGGAAATGCAGAAGGAA
ACAAGCACTTTTAAAAAAATTCAAATTGTAGGTGAAAGGTATTTCGATAG
CTATTATTTTATCATAGTGCATATGCGTATCTTTCTGTATGTCTTTCTTC
ATCTGTATTCCCCAAGCAAATTTTGGTCTATTACATTTCAGGATTTAACT
TTTCTTGGCTCAGATTCAACACAAACAAATGATCAGGTATCTTTTCTCTC
CACTCTTTACTTGATGAAGGCTGAAGGGATTGGAGATTTTTAAAACGTTT
TAGTCAGGTGGGAGTTCAAACAATTTGGGGTAACCCTTTGCAATCCGGGT
TCAAAATTTACAGGTGTGGTGGTGGGTTCTGAGACTTTGGAAATTTCTTT
CAGTATCCAAATATTTTTTTTAAATAAATTTTTCTTTAATCAAGATGAAA
AAATCTTTATAAAGCATCAAAGCATGCCATGAAATTAAAAAGTCTTCATT
AAAGGTATTTTTTTTTATGGAAAGGTCAGAAGATGCTGTGGCGGCAATAT
CTCAGAAATGCCCACGTATGCCTAGCCTGGTATTAGTAAGCACATGCTTA
GTAGCACTGTTTCCATTTTTAAGGTGGGGTTTTGAGGATTTTATAAAGTT
AAGTATGGCTAGTCAAGCAGGTTGGCTGGTGGTCTTTAGGTGTAAAATTT
TAAAGGGTCGTCTGATGGGGGATGCTTTAATGTTTTGTACTTATAAAGAA
AGATTATGAGTAATTACTATGTACTTTTCCATAAACCACCTTTGTTATGT
GCAGTTTTGTTGTTTTATGCTCAGTTTTGTATTCTGTGCACTTTTGTAAT
TTTTCTGTGCATTTCTTTGATTTCTGCGCACTCTTGTAATTTTTCTGCAC
ACTTTTGTAATTTTGAGATGCACACTTTTGTAATCAAGTAGCTGCGCACT
TTTGTAACTTTGACAAAAAATCAACCAAATTTTAACTTTGAAATAGTAGA
CTAAAATCCTAGACAACAAAGTTAAGCCTGCAAGATCGCAAATTATATCA
AACTGTAAAGTTATACTTACAATGGTTTATTGGCTCACTGACGTAAAGAT
TTATGTTAACGGAGTTAAATCGAGTTAATCCGAGTTTCGAGTTTTGAAAT
GTGGCATAAGCCAGATATTCAAATCAGTTATTAGAAACCATCTTAAATTC
AATCTTACCTCTTTAATGAATCAACAAAGCTCAATGATGATGCCACTTTT
AGTTACTGAGAAGTGAAAAAACAACACAGTCTATCAAAAATATCAAAAAC
GTATCTGTTTTAGGTACAACTCAGAACAACTCGGACTAACTCTTCATTGT
AAATATGACTTATTTGTGATATTTTCAGTATAATATGTAAAGTACCTGAA
AGTACTGTGATCTATAAATCATATAAAAATTAAGTAAAGTGCTTTTAAAA
AGCTTTTTAAGTATCCTTGACAAAGGTCAATCACAAAGAAGACAAATCCG
GAAAGATAGAAATGGATAAAAATGTTCGACATTTTTAGTGGATTGAGTCT
CCCTACCCCAAGATTAATTCTGCAATATACACGAGCTTTTAACAAACATA
ATTATATAATCATAAAGCAAAATATTGTTTTATGTTTCATATTTTAAATT
TCAATCATNATATAATCATAAAGCAAAATATTGTTTTATGTTTCATATTT
TAAATTTCAATCATAAAACTTTTTAGGTAACAGAATGTTGTATTTGTATG
CGTTCAATAAAATCC

Coding sequence (CDS) from alignment at sc0001965:18665..22729-

>TCONS_00038927 ID=TCONS_00038927|Name=TCONS_00038927|organism=Clytia hemisphaerica|type=CDS|length=3066bp|location=Sequence derived from alignment at sc0001965:18665..22729- (Clytia hemisphaerica)
GTAACAGAATGTTGTATTTGTATGCGTTCAATAAAATCCGATTTAACTTT
TCTTGGCTCAGATTCAACACAAACAAATGATCAGGTTATTGAAGTATCAT
CAGAAGAAGATGTATTAAGTCCAGAGACATCAGAAAGTGACGACCAAGAA
GAGGAGATGAGCCAAACCATTTTCCAGCCAGTTCAGGCTACTCCGGAACC
AGAGATTAATGAACAAGTTGAGACCAGTACAAATGAAACGATTGAAATTG
AAACAGATGAAACAGAAGAAATCGAAACTGATGAGATGAATATTACCTTA
GAAGAATTGGATGCGTCAGAGTTCACTCTAGAAGAGATCGAGAATGGAAA
AACTAAAAATATGGAAGAAATTACATTAGAGGACCTCGAAAATAGCGAAT
TTGAAGAATTTCCAAGAGAACATAATAATTCAAACGTGGTAACAGAATGT
TGTATTTGTATGCGTTCAATAAAATCCGATTTAACTTTTCTTGGCTCAGA
TTCAACACAAACAAATGATCAGGTTATTGAAGTATCATCAGAAGAAGATG
TATTAAGTCCAGAGACATCAGAAAGTGACGACCAAGAAGAGGAGATGAGC
CAAACCATTTTCCAGCCAGTTCAGGCTACTCCGGAACCAGAGATTAATGA
ACAAGTTGAGACCAGTACAAATGAAACGATTGAAATTGAAACAGATGAAA
CAGAAGAAATCGAAACTGATGAGATGAATATTACCTTAGAAGAATTGGAT
GCGTCAGAGTTCACTCTAGAAGAGATCGAGAATGGAAAAACTAAAAATAT
GGAAGAAATTACATTAGAGGACCTCGAAAATAGCGAATTTGAAGAATTTC
CAAGAGAACATAATAATTCAAACGTGGTAACAGAATGTTGTATTTGTATG
CGTTCAATAAAATCCGATTTAACTTTTCTTGGCTCAGATTCAACACAAAC
AAATGATCAGGTTATTGAAGTATCATCAGAAGAAGATGTATTAAGTCCAG
AGACATCAGAAAGTGACGACCAAGAAGAGGAGATGAGCCAAACCATTTTC
CAGCCAGTTCAGGCTACTCCGGAACCAGAGATTAATGAACAAGTTGAGAC
CAGTACAAATGAAACGATTGAAATTGAAACAGATGAAACAGAAGAAATCG
AAACTGATGAGATGAATATTACCTTAGAAGAATTGGATGCGTCAGAGTTC
ACTCTAGAAGAGATCGAGAATGGAAAAACTAAAAATATGGAAGAAATTAC
ATTAGAGGACCTCGAAAATAGCGAATTTGAAGAATTTCCAAGAGAACATA
ATAATTCAAACGTGGTAACAGAATGTTGTATTTGTATGCGTTCAATAAAA
TCCGATTTAACTTTTCTTGGCTCAGATTCAACACAAACAAATGATCAGGT
TATTGAAGTATCATCAGAAGAAGATGTATTAAGTCCAGAGACATCAGAAA
GTGACGACCAAGAAGAGGAGATGAGCCAAACCATTTTCCAGCCAGTTCAG
GCTACTCCGGAACCAGAGATTAATGAACAAGTTGAGACCAGTACAAATGA
AACGATTGAAATTGAAACAGATGAAACAGAAGAAATCGAAACTGATGAGA
TGAATATTACCTTAGAAGAATTGGATGCGTCAGAGTTCACTCTAGAAGAG
ATCGAGAATGGAAAAACTAAAAATATGGAAGAAATTACATTAGAGGACCT
CGAAAATAGCGAATTTGAAGAATTTCCAAGAGAACATAATAATTCAAACG
TGGTAACAGAATGTTGTATTTGTATGCGTTCAATAAAATCCGATTTAACT
TTTCTTGGCTCAGATTCAACACAAACAAATGATCAGGTTATTGAAGTATC
ATCAGAAGAAGATGTATTAAGTCCAGAGACATCAGAAAGTGACGACCAAG
AAGAGGAGATGAGCCAAACCATTTTCCAGCCAGTTCAGGCTACTCCGGAA
CCAGAGATTAATGAACAAGTTGAGACCAGTACAAATGAAACGATTGAAAT
TGAAACAGATGAAACAGAAGAAATCGAAACTGATGAGATGAATATTACCT
TAGAAGAATTGGATGCGTCAGAGTTCACTCTAGAAGAGATCGAGAATGGA
AAAACTAAAAATATGGAAGAAATTACATTAGAGGACCTCGAAAATAGCGA
ATTTGAAGAATTTCCAAGAGAACATAATAATTCAAACGTGGTAACAGAAT
GTTGTATTTGTATGCGTTCAATAAAATCCGATTTAACTTTTCTTGGCTCA
GATTCAACACAAACAAATGATCAGGTTATTGAAGTATCATCAGAAGAAGA
TGTATTAAGTCCAGAGACATCAGAAAGTGACGACCAAGAAGAGGAGATGA
GCCAAACCATTTTCCAGCCAGTTCAGGCTACTCCGGAACCAGAGATTAAT
GAACAAGTTGAGACCAGTACAAATGAAACGATTGAAATTGAAACAGATGA
AACAGAAGAAATCGAAACTGATGAGATGAATATTACCTTAGAAGAATTGG
ATGCGTCAGAGTTCACTCTAGAAGAGATCGAGAATGGAAAAACTAAAAAT
ATGGAAGAAATTACATTAGAGGACCTCGAAAATAGCGAATTTGAAGAATT
TCCAAGAGAACATAATAATTCAAACGTGGTAACAGAATGTTGTATTTGTA
TGCGTTCAATAAAATCCGATTTAACTTTTCTTGGCTCAGATTCAACACAA
ACAAATGATCAGGTTATTGAAGTATCATCAGAAGAAGATGTATTAAGTCC
AGAGACATCAGAAAGTGACGACCAAGAAGAGGAGATGAGCCAAACCATTT
TCCAGCCAGTTCAGGCTACTCCGGAACCAGAGATTAATGAACAAGTTGAG
ACCAGTACAAATGAAACGATTGAAATTGAAACAGATGAAACAGAAGAAAT
CGAAACTGATGAGATGAATATTACCTTAGAAGAATTGGATGCGTCAGAGT
TCACTCTAGAAGAGATCGAGAATGGAAAAACTAAAAATATGGAAGAAATT
ACATTAGAGGACCTCGAAAATAGCGAATTTGAAGAATTTCCAAGAGAACA
TAATAATTCAAACGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023393XLOC_023393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038927-exon-sc0001965-1575043694:22639..22729TCONS_00038927-exon-sc0001965-1575043694:22639..22729Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1575043694:22063..22125TCONS_00038927-exon-sc0001965-1575043694:22063..22125Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1575043694:21838..21918TCONS_00038927-exon-sc0001965-1575043694:21838..21918Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1575043694:21635..21685TCONS_00038927-exon-sc0001965-1575043694:21635..21685Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1575043694:20841..20909TCONS_00038927-exon-sc0001965-1575043694:20841..20909Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1575043694:20194..20238TCONS_00038927-exon-sc0001965-1575043694:20194..20238Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1575043694:18665..18703TCONS_00038927-exon-sc0001965-1575043694:18665..18703Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1510915933:22639..22729TCONS_00038927-exon-sc0001965-1510915933:22639..22729Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1510915933:22063..22125TCONS_00038927-exon-sc0001965-1510915933:22063..22125Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1510915933:21838..21918TCONS_00038927-exon-sc0001965-1510915933:21838..21918Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1510915933:21635..21685TCONS_00038927-exon-sc0001965-1510915933:21635..21685Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1510915933:20841..20909TCONS_00038927-exon-sc0001965-1510915933:20841..20909Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1510915933:20194..20238TCONS_00038927-exon-sc0001965-1510915933:20194..20238Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1510915933:18665..18703TCONS_00038927-exon-sc0001965-1510915933:18665..18703Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1491911889:22639..22729TCONS_00038927-exon-sc0001965-1491911889:22639..22729Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1491911889:22063..22125TCONS_00038927-exon-sc0001965-1491911889:22063..22125Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1491911889:21838..21918TCONS_00038927-exon-sc0001965-1491911889:21838..21918Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1491911889:21635..21685TCONS_00038927-exon-sc0001965-1491911889:21635..21685Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1491911889:20841..20909TCONS_00038927-exon-sc0001965-1491911889:20841..20909Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1491911889:20194..20238TCONS_00038927-exon-sc0001965-1491911889:20194..20238Clytia hemisphaericaexon
TCONS_00038927-exon-sc0001965-1491911889:18665..18703TCONS_00038927-exon-sc0001965-1491911889:18665..18703Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038927-proteinTCONS_00038927-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001965supercontigsc0001965:18665..22729 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.462753	0.150419	0	0	0.416032	0	0.396628	0.185659	0.909891	0.322013	0.625108	0.616382	0.102588	0	1.08269	1.50129	0.231591	0.366591	1.14781	0.171585	0.298277	0	0	0.482378	0	0	0	0	0.342413	0.348865
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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