TCONS_00038921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038921
Unique NameTCONS_00038921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038921 ID=TCONS_00038921|Name=TCONS_00038921|organism=Clytia hemisphaerica|type=transcript|length=687bp
TAAATTTGCTCAaaatcaactttgctatttttttgcaTACAAAAACAATA
TAATGTGAGGTAACATCTTGAAACAACATtcgatctttcacttgtttgca
ggatatcgttgcgtaaaaaagcagctttaatttatctgactcagcatgaa
gacactgcctaaaataagaaaatctttaagtAGAAAATCTTTAAGTCTTG
AAAAGAAATCGTGTAAACGATTTTTCcaattcattttaaatgaatAACAA
ATTGGAAAATGATTTCGATGACGATGATGACAACTATGCAAATGACTTTT
CTGATCAATGAAGCTTTACTATGCAGCATGAACTTGTATGATGTCCAGTT
GAAATGTAGAGACGGTTGAATATCTagacaagaaagcctaagcgaCGTAA
AGGCCCGGCAGTTTTGTTGGTAGTGCTGGTATTTTTCCGTTGCAGAGTCG
CCATGCATTTCAATTTATAGGAGTGAATCTTTTCAATGTATAGCCTTGAT
TCGGGCGAGCAATTAagatttaattactttaattttaCCTCTTACTaatt
aagaaagaaagatttgaccaACTAAGTTGAAGGTATTAATTATATGTGGT
TTTTTCTTACACATGCGCACAATAGAAAGTCACATTATTGAATTTTAGCC
TGGGCAATCGTCAATTGATAATTGCGCGCAAAGGCCC
Run BLAST on NCBI

transcript from alignment at sc0001964:13951..14637

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038921 ID=TCONS_00038921|Name=TCONS_00038921|organism=Clytia hemisphaerica|type=transcript|length=687bp|location=Sequence derived from alignment at sc0001964:13951..14637 (Clytia hemisphaerica)
GGGCCTTTGCGCGCAATTATCAATTGACGATTGCCCAGGCTAAAATTCAA
TAATGTGACTTTCTATTGTGCGCATGTGTAAGAAAAAACCACATATAATT
AATACCTTCAACTTAGTtggtcaaatctttctttcttaattAGTAAGAGG
taaaattaaagtaattaaatctTAATTGCTCGCCCGAATCAAGGCTATAC
ATTGAAAAGATTCACTCCTATAAATTGAAATGCATGGCGACTCTGCAACG
GAAAAATACCAGCACTACCAACAAAACTGCCGGGCCTTTACGtcgcttag
gctttcttgtctAGATATTCAACCGTCTCTACATTTCAACTGGACATCAT
ACAAGTTCATGCTGCATAGTAAAGCTTCATTGATCAGAAAAGTCATTTGC
ATAGTTGTCATCATCGTCATCGAAATCATTTTCCAATTTGTTattcattt
aaaatgaattgGAAAAATCGTTTACACGATTTCTTTTCAAGACTTAAAGA
TTTTCTacttaaagattttcttattttaggcagtgtcttcatgctgagtc
agataaattaaagctgcttttttacgcaacgatatcctgcaaacaagtga
aagatcgaATGTTGTTTCAAGATGTTACCTCACATTATATTGTTTTTGTA
tgcaaaaaaatagcaaagttgatttTGAGCAAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023388XLOC_023388Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038921-exon-sc0001964-1491911889:13951..14637TCONS_00038921-exon-sc0001964-1491911889:13951..14637Clytia hemisphaericaexon
TCONS_00038921-exon-sc0001964-1510915933:13951..14637TCONS_00038921-exon-sc0001964-1510915933:13951..14637Clytia hemisphaericaexon
TCONS_00038921-exon-sc0001964-1575043694:13951..14637TCONS_00038921-exon-sc0001964-1575043694:13951..14637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001964supercontigsc0001964:13951..14637 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.372534	0.28951	0.336148	0.739954	0.300274	0.553655	0.667962	0.357336	0.0625448	0.232415	0.075196	0.247155	0.246811	0.666421	0.421453	0.0904566	0	0.342652	0.315595	0.0825619	0.645852	0.315024	0.172974	0.0773688	0.39844	0.497838	0.407088	0.629205	0.0823798	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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