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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038919 ID=TCONS_00038919|Name=TCONS_00038919|organism=Clytia hemisphaerica|type=transcript|length=608bp
aatgcctatcacgtgtcaaaatttgaaaatgattgaataaatagttcaga
agttaacagcactttaaaatttggaGTTNAAGGGAAAGATGAGATGATGA
AGTTGAGACCAACTTTAGTGAAAATCTTTGGTGATGGAATGTCAGATGTG
ATCATGAAGAGTTTGAAGGAGACAAAGCTGAATAGAGGGAAaccgaaaaa
gaaaatgacgtcattacttGGAGATCGATCATTTGAAATGAAGTTTGTAT
CAAACAGCAATGATGAGTTTAAATCTGTTCCACAACACATGTCGTATCAT
CAAGGTGAACTCTTCATCGATGGTAACCACATATCCAATGCTGAAGTTTA
TCAAAATAAGAAGATTGTTTGGTCAAAACGTGATAATGATGGTTTCTGGT
ATCATGGAATCTTCACCTTGCGAAAGAATAACTGTCATGCCAAATGCATC
ATGGTCAAATCGAAAGATTTCGATTGCAAACAGATCATTTCGAGCACAGA
GTTGACGGCAGCTGTGGCAAATGTTTATGctatgaaaaaaagtgttgcTG
AAATCCCTGATGTCCCTGATAAAGTAGACGATCAGAAAAGTGGAGTCAAG
AATGAAGG Run BLAST on NCBI transcript from alignment at sc0001964:22435..23871+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038919 ID=TCONS_00038919|Name=TCONS_00038919|organism=Clytia hemisphaerica|type=transcript|length=1437bp|location=Sequence derived from alignment at sc0001964:22435..23871+ (Clytia hemisphaerica)
aatgcctatcacgtgtcaaaatttgaaaatgattgaataaatagttcaga
agttaacagcactttaaaatttggaGTTNAAGGGAAAGATGAGATGATGA
AGTTGAGACCAACTTTAGTGAAAATCTTTGGTGATGGAATGTCAGATGTG
ATCATGAAGAGTTTGAAGGAGACAAAGCTGAATAGAGGGAAaccgaaaaa
gaaaatgacgtcattacttGGAGATCGATCATTTGAAATGAAGTTTGTAT
CAAACAGCAATGATGAGTTTAAATCTGTTCCACAACACATGTCGTATCAT
CAAGGTGAACTCTTCATCGATGGTAACCACATATCCAATGCTGAAGTTTA
TCAAAATAAGAAGGTGGGTGTTGTAATGTCAATATGATCAATGATTTTAG
TCACTTTGATCGTGATATGATGACGTCAGAGCGGGAAAAATTGTGAACCC
ATTGCAGTGACGAATTTCATCAATTTCCAGGCTGTAAACTTTATATTTCT
ATCCCAGcaagcacacaacgttgttttaacgttcaaataacatTATTTGG
ACCGTCATCGACATTAGatagacgttgttttgacgttgtgtgccagctag
gaTGTTTGTGGCTTACAACCttgtttttttacatttttgtttgaaagatc
CCGGATACCtagataccccttaaaacctacaaaaagaCGGCACCCTCTAT
CTCATAATctaggctgaaactttttttgttgaaagtacGCTGACTATGGT
TTTCTTCAATAGCAttgatgttttgtagaaaccagttttcagtttttcac
aattctttaaaaaattgaaaaatgaagatgaaaattgaatgagaaaaaaa
agatatttgaacTTCGCTGATTCCAAATCTGTGCTCAGATTTTTCATACC
ATTCTAGGagcaaaagttacagcccttcGAAGTGAGTCCACTTTTGCgct
ttttggccattttcccGCTTCAAAGGGTTTGGAAGCAGTGAAGTTCAAat
atttgcattaatatcaatTCGAAATTTTTAGCATAGCTTTGTCTTggctt
cttcatttttcatcttaatttttccgtccattttcaaaagaaaattaact
tgcgaaaaaattttctttccaacgATGCATAATTATATATCATTAGCATA
GATTAAAATGTTATACTGAGCAGAATTTCTATACGGTCTTAGATTGTTTG
GTCAAAACGTGATAATGATGGTTTCTGGTATCATGGAATCTTCACCTTGC
GAAAGAATAACTGTCATGCCAAATGCATCATGGTCAAATCGAAAGATTTC
GATTGCAAACAGATCATTTCGAGCACAGAGTTGACGGCAGCTGTGGCAAA
TGTTTATGctatgaaaaaaagtgttgcTGAAATCCCTGATGTCCCTGATA
AAGTAGACGATCAGAAAAGTGGAGTCAAGAATGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038919-exon-sc0001964-1491911889:22435..22797 | TCONS_00038919-exon-sc0001964-1491911889:22435..22797 | Clytia hemisphaerica | exon |
| TCONS_00038919-exon-sc0001964-1510915933:22435..22797 | TCONS_00038919-exon-sc0001964-1510915933:22435..22797 | Clytia hemisphaerica | exon |
| TCONS_00038919-exon-sc0001964-1575043694:22435..22797 | TCONS_00038919-exon-sc0001964-1575043694:22435..22797 | Clytia hemisphaerica | exon |
| TCONS_00038919-exon-sc0001964-1491911889:23627..23871 | TCONS_00038919-exon-sc0001964-1491911889:23627..23871 | Clytia hemisphaerica | exon |
| TCONS_00038919-exon-sc0001964-1510915933:23627..23871 | TCONS_00038919-exon-sc0001964-1510915933:23627..23871 | Clytia hemisphaerica | exon |
| TCONS_00038919-exon-sc0001964-1575043694:23627..23871 | TCONS_00038919-exon-sc0001964-1575043694:23627..23871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001964 | supercontig | sc0001964:22435..23871 + |
Blast
The following BLAST results are available for this feature:
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