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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038918 ID=TCONS_00038918|Name=TCONS_00038918|organism=Clytia hemisphaerica|type=transcript|length=342bp
GTTTAAACCTGTTCCACAACACATGTCGTATCATCAAGGTGAACTCTTCA
TCGATGGTAACCACATATCCAATGCTGAAGTTTATCAAAATAAGAAGATT
GTTTGGTCAAAACGTGATAATGATGGTTTCTGGTATCATGGAATCTTCAC
CTTGCGAAAGAATAACTGTCATGCCAAATGCATCATGGTCAAATCGAAAG
ATTTCGATTGCAAACAGATCATTTCGAGCACAGAGTTGACGGCAGCTGTG
GCAAATGTTTATGctatgaaaaaaagtgttgcTGAAATCCCTGATGTCCC
TGATAAAGTAGACGATCAGAAAAGTGGAGTCAAGAATGAAGG Run BLAST on NCBI protein sequence of TCONS_00038918-protein >TCONS_00038918-protein ID=TCONS_00038918-protein|Name=TCONS_00038918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
FKPVPQHMSYHQGELFIDGNHISNAEVYQNKKIVWSKRDNDGFWYHGIFT
LRKNNCHAKCIMVKSKDFDCKQIISSTELTAAVANVYAMKKSVAEIPDVP
DKVDDQKSGVKNE Run BLAST on NCBI transcript from alignment at sc0001964:21470..23871+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038918 ID=TCONS_00038918|Name=TCONS_00038918|organism=Clytia hemisphaerica|type=transcript|length=2402bp|location=Sequence derived from alignment at sc0001964:21470..23871+ (Clytia hemisphaerica)
GTTTAAACCTGTTCCACAACACATGTCGTATCATCAAGGTGAACTCTTCA
TCGATGGAAATCACATATCAAATGCTGAAGTTTATCAAAACAAGAAGATA
GTTTGGTCAAAACGTGATGATGGTGGACGTTGGTACCATGGTGTATTTAC
AATCCGAAACAATGGTGTTACCGGTAAATGTATCTTGATAAAGTCTAAAG
ATTTCAATTGTAAGCAGATTATATCGAGTACAGAATTGGAAGTAAAAATG
GTTCGAAATGATTATGTTATGAAAAAGAGTGTAGAAGAGATCCCCAAGGA
TGAAGATGAAGACAAAGATGGAaggaagaagatgaaaaaatcaACGAAAA
ATGAAGGTACATATTATTCTTATAAGCAACCAGCCCTGAAATTAGCAAtt
tttcactatctcgtaaagtaaaagctttttagataatctaaccatggcaa
acagataaagcagccggcgagacgacctttttttccgatgtgttctaaGA
GCATATtttagctagaaattttgatctgttctgattagatCTTCGAaata
atcagctagaaataatgatgtgttctgacgagacaggggtacaGTCAAGG
TCATttaacgtgttcttgttgtctaggtaacccaagaaagcttcagaaca
catcttttaaggagacagaggtataatcaagaaaaaatttaaaatttcca
cctgtcgtaaaaaagaccaaatatatggtttacaaaaataaaaatatcta
ttaCAGAACCAATgaagatatttagattctgtttgaagattctgaaagat
aaaaagctgctttttaacatatttgcagtttttgcattttccatgaagat
tttttcttaaaatctatgctgaagataagtaaaattttcaaaatctgatg
aCCTCATAAATAATGacatcattattttcaaaatttattttttaattttt
caaattcacactgtcaatgcctatcacgtgtcaaaatttgaaaatgattg
aataaatagttcagaagttaacagcactttaaaatttggaGTTNAAGGGA
AAGATGAGATGATGAAGTTGAGACCAACTTTAGTGAAAATCTTTGGTGAT
GGAATGTCAGATGTGATCATGAAGAGTTTGAAGGAGACAAAGCTGAATAG
AGGGAAaccgaaaaagaaaatgacgtcattacttGGAGATCGATCATTTG
AAATGAAGTTTGTATCAAACAGCAATGATGAGTTTAAATCTGTTCCACAA
CACATGTCGTATCATCAAGGTGAACTCTTCATCGATGGTAACCACATATC
CAATGCTGAAGTTTATCAAAATAAGAAGGTGGGTGTTGTAATGTCAATAT
GATCAATGATTTTAGTCACTTTGATCGTGATATGATGACGTCAGAGCGGG
AAAAATTGTGAACCCATTGCAGTGACGAATTTCATCAATTTCCAGGCTGT
AAACTTTATATTTCTATCCCAGcaagcacacaacgttgttttaacgttca
aataacatTATTTGGACCGTCATCGACATTAGatagacgttgttttgacg
ttgtgtgccagctaggaTGTTTGTGGCTTACAACCttgtttttttacatt
tttgtttgaaagatcCCGGATACCtagataccccttaaaacctacaaaaa
gaCGGCACCCTCTATCTCATAATctaggctgaaactttttttgttgaaag
tacGCTGACTATGGTTTTCTTCAATAGCAttgatgttttgtagaaaccag
ttttcagtttttcacaattctttaaaaaattgaaaaatgaagatgaaaat
tgaatgagaaaaaaaagatatttgaacTTCGCTGATTCCAAATCTGTGCT
CAGATTTTTCATACCATTCTAGGagcaaaagttacagcccttcGAAGTGA
GTCCACTTTTGCgctttttggccattttcccGCTTCAAAGGGTTTGGAAG
CAGTGAAGTTCAAatatttgcattaatatcaatTCGAAATTTTTAGCATA
GCTTTGTCTTggcttcttcatttttcatcttaatttttccgtccattttc
aaaagaaaattaacttgcgaaaaaattttctttccaacgATGCATAATTA
TATATCATTAGCATAGATTAAAATGTTATACTGAGCAGAATTTCTATACG
GTCTTAGATTGTTTGGTCAAAACGTGATAATGATGGTTTCTGGTATCATG
GAATCTTCACCTTGCGAAAGAATAACTGTCATGCCAAATGCATCATGGTC
AAATCGAAAGATTTCGATTGCAAACAGATCATTTCGAGCACAGAGTTGAC
GGCAGCTGTGGCAAATGTTTATGctatgaaaaaaagtgttgcTGAAATCC
CTGATGTCCCTGATAAAGTAGACGATCAGAAAAGTGGAGTCAAGAATGAA
GG Coding sequence (CDS) from alignment at sc0001964:21470..23871+ >TCONS_00038918 ID=TCONS_00038918|Name=TCONS_00038918|organism=Clytia hemisphaerica|type=CDS|length=1017bp|location=Sequence derived from alignment at sc0001964:21470..23871+ (Clytia hemisphaerica)
TTTAAACCTGTTCCACAACACATGTCGTATCATCAAGGTGAACTCTTCAT
CGATGGTAACCACATATCCAATGCTGAAGTTTATCAAAATAAGAAGATTG
TTTGGTCAAAACGTGATAATGATGGTTTCTGGTATCATGGAATCTTCACC
TTGCGAAAGAATAACTGTCATGCCAAATGCATCATGGTCAAATCGAAAGA
TTTCGATTGCAAACAGATCATTTCGAGCACAGAGTTGACGGCAGCTGTGG
CAAATGTTTATGctatgaaaaaaagtgttgcTGAAATCCCTGATGTCCCT
GATAAAGTAGACGATCAGAAAAGTGGAGTCAAGAATGAATTTAAACCTGT
TCCACAACACATGTCGTATCATCAAGGTGAACTCTTCATCGATGGTAACC
ACATATCCAATGCTGAAGTTTATCAAAATAAGAAGATTGTTTGGTCAAAA
CGTGATAATGATGGTTTCTGGTATCATGGAATCTTCACCTTGCGAAAGAA
TAACTGTCATGCCAAATGCATCATGGTCAAATCGAAAGATTTCGATTGCA
AACAGATCATTTCGAGCACAGAGTTGACGGCAGCTGTGGCAAATGTTTAT
GctatgaaaaaaagtgttgcTGAAATCCCTGATGTCCCTGATAAAGTAGA
CGATCAGAAAAGTGGAGTCAAGAATGAATTTAAACCTGTTCCACAACACA
TGTCGTATCATCAAGGTGAACTCTTCATCGATGGTAACCACATATCCAAT
GCTGAAGTTTATCAAAATAAGAAGATTGTTTGGTCAAAACGTGATAATGA
TGGTTTCTGGTATCATGGAATCTTCACCTTGCGAAAGAATAACTGTCATG
CCAAATGCATCATGGTCAAATCGAAAGATTTCGATTGCAAACAGATCATT
TCGAGCACAGAGTTGACGGCAGCTGTGGCAAATGTTTATGctatgaaaaa
aagtgttgcTGAAATCCCTGATGTCCCTGATAAAGTAGACGATCAGAAAA
GTGGAGTCAAGAATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038918-exon-sc0001964-1491911889:21470..21507 | TCONS_00038918-exon-sc0001964-1491911889:21470..21507 | Clytia hemisphaerica | exon |
| TCONS_00038918-exon-sc0001964-1510915933:21470..21507 | TCONS_00038918-exon-sc0001964-1510915933:21470..21507 | Clytia hemisphaerica | exon |
| TCONS_00038918-exon-sc0001964-1575043694:21470..21507 | TCONS_00038918-exon-sc0001964-1575043694:21470..21507 | Clytia hemisphaerica | exon |
| TCONS_00038918-exon-sc0001964-1491911889:22739..22797 | TCONS_00038918-exon-sc0001964-1491911889:22739..22797 | Clytia hemisphaerica | exon |
| TCONS_00038918-exon-sc0001964-1510915933:22739..22797 | TCONS_00038918-exon-sc0001964-1510915933:22739..22797 | Clytia hemisphaerica | exon |
| TCONS_00038918-exon-sc0001964-1575043694:22739..22797 | TCONS_00038918-exon-sc0001964-1575043694:22739..22797 | Clytia hemisphaerica | exon |
| TCONS_00038918-exon-sc0001964-1491911889:23627..23871 | TCONS_00038918-exon-sc0001964-1491911889:23627..23871 | Clytia hemisphaerica | exon |
| TCONS_00038918-exon-sc0001964-1510915933:23627..23871 | TCONS_00038918-exon-sc0001964-1510915933:23627..23871 | Clytia hemisphaerica | exon |
| TCONS_00038918-exon-sc0001964-1575043694:23627..23871 | TCONS_00038918-exon-sc0001964-1575043694:23627..23871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001964 | supercontig | sc0001964:21470..23871 + |
Blast
The following BLAST results are available for this feature:
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