TCONS_00038917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038917
Unique NameTCONS_00038917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038917 ID=TCONS_00038917|Name=TCONS_00038917|organism=Clytia hemisphaerica|type=transcript|length=807bp
ATAAACATGAAAATACCTTAAATCGAGTTGTAAAgttttggaaagcttga
aaatatagccttgaaactgcttgaaaataaagttttattgaaaagttggt
ttgGTTCAAGTAAGAattgctgattttattgcttaaatAGGTTTTTTACA
AGATTACCTTGAGATCAGTAAAGCTCCCTGATCAAAATTTCCAATATTTA
TggtttcccccctctttatttCCCCCCCATAACTAAAAAATGGGGTGCCA
AAATCAGATTGAATCAGACGCCCCCCTTTATAGAGGGGGGAGGGAGGATA
CTATGATACCTTTGACTTTATCGAATATTTCCTGTAGCAGCGCGTCAGAA
TCTGAAACAAAGTTTATCTCACCCAATAAACGTGTGATTCACAGGCGAAA
ACCCTTTTCGTTTTCTCCAACAAATCAGAATGCATGTTATGAATTATTTG
AGGAAACCCAGGCGAATGCTCACAAAATAGTGGGAAAATTTAATGGGGGT
CAATCTTATAGCTGGCGCTTTTTAGTGCTTTAGTAAAGCAAAGTCAAAGT
CGGGAGATCAAGGGAACAGCTCTATGAGAAATTATGGAAAGAGAAATGca
ctccaaccctgaccctaaccgATATAAAGAATTTTCACCCGCACGGATTG
AATAACAAAAAATCTTCTTTCACCCGTATGAAGGAGTCAGCACCGTAATG
AACAGGAGTTTTATAGACCTTTGGCTTATCATGATACCATTTTGACTTCA
TAGATTTTGAGTGtagaaatttaaactttttggcTGGTTTTGTATCTGTT
CCAAAGT
Run BLAST on NCBI

transcript from alignment at sc0001963:10242..11048

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038917 ID=TCONS_00038917|Name=TCONS_00038917|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at sc0001963:10242..11048 (Clytia hemisphaerica)
ACTTTGGAACAGATACAAAACCAgccaaaaagtttaaatttctaCACTCA
AAATCTATGAAGTCAAAATGGTATCATGATAAGCCAAAGGTCTATAAAAC
TCCTGTTCATTACGGTGCTGACTCCTTCATACGGGTGAAAGAAGATTTTT
TGTTATTCAATCCGTGCGGGTGAAAATTCTTTATATcggttagggtcagg
gttggagtgCATTTCTCTTTCCATAATTTCTCATAGAGCTGTTCCCTTGA
TCTCCCGACTTTGACTTTGCTTTACTAAAGCACTAAAAAGCGCCAGCTAT
AAGATTGACCCCCATTAAATTTTCCCACTATTTTGTGAGCATTCGCCTGG
GTTTCCTCAAATAATTCATAACATGCATTCTGATTTGTTGGAGAAAACGA
AAAGGGTTTTCGCCTGTGAATCACACGTTTATTGGGTGAGATAAACTTTG
TTTCAGATTCTGACGCGCTGCTACAGGAAATATTCGATAAAGTCAAAGGT
ATCATAGTATCCTCCCTCCCCCCTCTATAAAGGGGGGCGTCTGATTCAAT
CTGATTTTGGCACCCCATTTTTTAGTTATGGGGGGGaaataaagaggggg
gaaaccATAAATATTGGAAATTTTGATCAGGGAGCTTTACTGATCTCAAG
GTAATCTTGTAAAAAACCTatttaagcaataaaatcagcaatTCTTACTT
GAACcaaaccaacttttcaataaaactttattttcaagcagtttcaaggc
tatattttcaagctttccaaaacTTTACAACTCGATTTAAGGTATTTTCA
TGTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023385XLOC_023385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038917-exon-sc0001963-1491911889:10242..11048TCONS_00038917-exon-sc0001963-1491911889:10242..11048Clytia hemisphaericaexon
TCONS_00038917-exon-sc0001963-1510915933:10242..11048TCONS_00038917-exon-sc0001963-1510915933:10242..11048Clytia hemisphaericaexon
TCONS_00038917-exon-sc0001963-1575043694:10242..11048TCONS_00038917-exon-sc0001963-1575043694:10242..11048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001963supercontigsc0001963:10242..11048 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06789	0.404974	2.05944	3.02306	0.160012	0	0.0762746	0	0.049994	0	0	0.118535	0.11837	0	0	0.0361524	0	0	0.126133	0	0.057361	0.0839361	0.0680235	0.18553	0	0.227393	0.325398	0.173637	0.329244	0.0695746
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top