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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038915 ID=TCONS_00038915|Name=TCONS_00038915|organism=Clytia hemisphaerica|type=transcript|length=2242bp
caaaagatTCTTTACCTGTGATCCTGATTTTCTCATTTCTTTTatgtttc
ttcttctttcatGAACAATGGTCAGGATGGAACTTCTGATCTTGTTCTTT
CCCATGTGTTCAAGCATCCTCAAAGATGTTGTTGATTCACCATGCAACCA
ATCAACAAAAGCATCAAgttcttctttgttttctttatctGCAAATGATG
CTGGCAGTCTATCATCAGACCATTTTCGTTTGACCTCAGCACGTNGCAAA
TGATGCTGGCAGTCTATCATCAGACCATTTCCGTTTGACCTCAGCACGTA
GTTGCTTTTGCCTGGTGTGAGGAATAAAAATACATGtcctagaaaatttg
aattaacTCCTAGCAAAATATTAGTTGGTTTTGTTAAAATGAAAAGTTGC
CATTCTACAGCCACAAAATTTGACATAGATAAACTTACTCAATCTTTTGT
TTAATGAAACTCTCTAGTTAGTGTGAACTTTAATATTTCCAAACTAATAG
CAACTCATATTCCAAGTAAAAGGAGTTATATGAAAGCCTTGCAGAAACAA
TATCATGATTGAGTGGATGACATACCATGTCTGATTTTGTCAACTACTTC
AGAGATGCAAATAAAAGGAGAAGCTATTGCTTGGCAAACTGCTGCCAAAT
CAAATACATTGTAAATAGGAGAGACTTACTGAAGGTTTTTCTGTCGTTTC
AGAAGTCTATTTGTCATTGGTGTTGATGCCTTTATAGATTTTCTGGTGGG
AGTGTCATTGTGATTTTTTGTTATTGGATAGACTGTCTGAAATTGTAGGA
CCTCCTTTATTGTAAACTCCATAGATGACAGCAGAAAGTATTGGTCTGGC
GTTCTGATTAGCGTTCCAAATAGCTTTCCATCCAATTCGTGACCTGGTAA
CGAaatatatacatttttttataagcatactcaGACTCTCCCACTTGATA
AATGATATCAATTGATTCTGGTAATCGATTGACAATCAATAATCAAGTGA
GAGGCTTGATTGCCTACCAAATTGATTGATTATTCAATTGACTCTAAGAT
GATTGATTGATCACAATTTATAGCTAAGCGATGAAAAGACTAACAGTGAT
CAATCGATACTTAAGATATTAGAATAGTCTTGATTACCTATCCATTATGT
TTATCTCTATCAATATCCAGTCATTTATTGCAAAAAGATTAAACTAATTA
TATACATATCAAGTGGGATAGTCTagtaccataagttggtctTATGTCAA
CATTCCTCTTCTAATTCCAACACTCAGTTTTAGAGATAGAAATAATAGTA
AAGTCAGAATCACTAatagacaaaaaattttttcctctCTGGTCTCTAAG
TAAGgcagcaatcacaaatatcttgtTTCATGTCATCCGACCgattctcg
aaaattgagttgGTAAATTCGTCtaactttttctgtcaatgatgtttcct
ttgttcaaaaatttattattaccaattttttgcgagcgattttctagcgc
attcgcagcattttgactttatttATTATTACATGCGTTATTTTGGGTCt
gaggtcacagtgttcaaaggtcataatttgaaatcacccaTAACACGCGg
ttggctggctggcagtttcccttgagaatacactccaaaaatggatgatg
gaggTAAGAAAACGCaaaaatttttacgaccgactaactcactttttaga
cccacaCCGCGGTGACATtaaatgaagatatttttgattgccCCCTAATG
AAATATAGTTTCCATGAGCAATTCCGACTTTTCTACTATTCCTATTTCCA
AAGAAGTGGTGTCAGGATTAGAAGAGAGATAGATGTCGACATCAgaagac
caagttacggtattaTCTATGATTCAACAAAGTAATGACTAGCCTCTACC
TGGCTTAGATACAATCTGTGAGAAGCCTGCAGAGTTTGAATAATAAGAGG
TGGTTGAAAGAAtgagccaaaaaaaatttagggACCTTCTGGACAACCAC
ATAATTTTCAGAGGAAAAGAACTTCTTAAGCACTTCAACAATTcatcaaa
ataaaagagaacaaaaagatttttcaggtTAAAAATTATCACGACATACT
TATAATTTTATCAGCAAGATCAGCTGGAAATGTTCTTCGTAGGAAGGTTG
CCAGTTCGTCTTTAGTAAAGTCTTCCAATCCAGGTTCCATTTTAAATATC
TTTATatcgaaaattattttctatGTATGACTGTTCTTGATC Run BLAST on NCBI transcript from alignment at sc0001963:13810..16109- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038915 ID=TCONS_00038915|Name=TCONS_00038915|organism=Clytia hemisphaerica|type=transcript|length=2300bp|location=Sequence derived from alignment at sc0001963:13810..16109- (Clytia hemisphaerica)
CAAAAGATTCTTTACCTGTGATCCTGATTTTCTCATTTCTTTTATGTTTC
TTCTTCTTTCATGAACAATGGTCAGGATGGAACTTCTGATCTTGTTCTTT
CCCATGTGTTCAAGCATCCTCAAAGATGTTGTTGATTCACCATGCAACCA
ATCAACAAAAGCATCAAGTTCTTCTTTGTTTTCTTTATCTGCAAATGATG
CTGGCAGTCTATCATCAGACCATTTTCGTTTGACCTCAGCACGTNGCAAA
TGATGCTGGCAGTCTATCATCAGACCATTTCCGTTTGACCTCAGCACGTA
GTTGCTTTTGCCTGGTGTGAGGAATAAAAATACATGTCCTAGAAAATTTG
AATTAACTCCTAGCAAAATATTAGTTGGTTTTGTTAAAATGAAAAGTTGC
CATTCTACAGCCACAAAATTTGACATAGATAAACTTACTCAATCTTTTGT
TTAATGAAACTCTCTAGTTAGTGTGAACTTTAATATTTCCAAACTAATAG
CAACTCATATTCCAAGTAAAAGGAGTTATATGAAAGCCTTGCAGAAACAA
TATCATGATTGAGTGGATGACATACCATGTCTGATTTTGTCAACTACTTC
AGAGATGCAAATAAAAGGAGAAGCTATTGCTTGGCAAACTGCTGCCAAAT
CAAATACATTGTAAATAGGAGAGACTTACTGAAGGTTTTTCTGTCGTTTC
AGAAGTCTATTTGTCATTGGTGTTGATGCCTTTATAGATTTTCTGGTGGG
AGTGTCATTGTGATTTTTTGTTATTGGATAGACTGTCTGAAATTGTAGGA
CCTCCTTTATTGTAAACTCCATAGATGACAGCAGAAAGTATTGGTCTGGC
GTTCTGATTAGCGTTCCAAATAGCTTTCCATCCAATTCGTGACCTGGTAA
CGAAATATATACATTTTTTTATAAGCATACTCAGACTCTCCCACTTGATA
AATGATATCAATTGATTCTGGTAATCGATTGACAATCAATAATCAAGTGA
GAGGCTTGATTGCCTACCAAATTGATTGATTATTCAATTGACTCTAAGAT
GATTGATTGATCACAATTTATAGCTAAGCGATGAAAAGACTAACAGTGAT
CAATCGATACTTAAGATATTAGAATAGTCTTGATTACCTATCCATTATGT
TTATCTCTATCAATATCCAGTCATTTATTGCAAAAAGATTAAACTAATTA
TATACATATCAAGTGGGATAGNCAATATCCAGTCATTGATTGCAAAATGA
TTAAACTAATTACATATCAAGTGGGATAGTCTAGTACCATAAGTTGGTCT
TATGTCAACATTCCTCTTCTAATTCCAACACTCAGTTTTAGAGATAGAAA
TAATAGTAAAGTCAGAATCACTAATAGACAAAAAATTTTTTCCTCTCTGG
TCTCTAAGTAAGGCAGCAATCACAAATATCTTGTTTCATGTCATCCGACC
GATTCTCGAAAATTGAGTTGGTAAATTCGTCTAACTTTTTCTGTCAATGA
TGTTTCCTTTGTTCAAAAATTTATTATTACCAATTTTTTGCGAGCGATTT
TCTAGCGCATTCGCAGCATTTTGACTTTATTTATTATTACATGCGTTATT
TTGGGTCTGAGGTCACAGTGTTCAAAGGTCATAATTTGAAATCACCCATA
ACACGCGGTTGGCTGGCTGGCAGTTTCCCTTGAGAATACACTCCAAAAAT
GGATGATGGAGGTAAGAAAACGCAAAAATTTTTACGACCGACTAACTCAC
TTTTTAGACCCACACCGCGGTGACATTAAATGAAGATATTTTTGATTGCC
CCCTAATGAAATATAGTTTCCATGAGCAATTCCGACTTTTCTACTATTCC
TATTTCCAAAGAAGTGGTGTCAGGATTAGAAGAGAGATAGATGTCGACAT
CAGAAGACCAAGTTACGGTATTATCTATGATTCAACAAAGTAATGACTAG
CCTCTACCTGGCTTAGATACAATCTGTGAGAAGCCTGCAGAGTTTGAATA
ATAAGAGGTGGTTGAAAGAATGAGCCAAAAAAAATTTAGGGACCTTCTGG
ACAACCACATAATTTTCAGAGGAAAAGAACTTCTTAAGCACTTCAACAAT
TCATCAAAATAAAAGAGAACAAAAAGATTTTTCAGGTTAAAAATTATCAC
GACATACTTATAATTTTATCAGCAAGATCAGCTGGAAATGTTCTTCGTAG
GAAGGTTGCCAGTTCGTCTTTAGTAAAGTCTTCCAATCCAGGTTCCATTT
TAAATATCTTTATATCGAAAATTATTTTCTATGTATGACTGTTCTTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038915-exon-sc0001963-1575043694:14905..16109 | TCONS_00038915-exon-sc0001963-1575043694:14905..16109 | Clytia hemisphaerica | exon |
| TCONS_00038915-exon-sc0001963-1575043694:13810..14846 | TCONS_00038915-exon-sc0001963-1575043694:13810..14846 | Clytia hemisphaerica | exon |
| TCONS_00038915-exon-sc0001963-1510915933:14905..16109 | TCONS_00038915-exon-sc0001963-1510915933:14905..16109 | Clytia hemisphaerica | exon |
| TCONS_00038915-exon-sc0001963-1510915933:13810..14846 | TCONS_00038915-exon-sc0001963-1510915933:13810..14846 | Clytia hemisphaerica | exon |
| TCONS_00038915-exon-sc0001963-1491911889:14905..16109 | TCONS_00038915-exon-sc0001963-1491911889:14905..16109 | Clytia hemisphaerica | exon |
| TCONS_00038915-exon-sc0001963-1491911889:13810..14846 | TCONS_00038915-exon-sc0001963-1491911889:13810..14846 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001963 | supercontig | sc0001963:13810..16109 - |
Blast
The following BLAST results are available for this feature:
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