TCONS_00038914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038914
Unique NameTCONS_00038914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038914 ID=TCONS_00038914|Name=TCONS_00038914|organism=Clytia hemisphaerica|type=transcript|length=853bp
tttagagccataataaaaaataaatgataacAATGATAAAGATTATACTG
GTCAGTAAATTGTTTCTTTTACATTTTGTAAACACACACTAAAAGCgcgc
tttttttaatttttgacaaccagaaacagatgaaaatcgaaaaaaaaaag
aatcaaccAAAAGTTTCACGTTTCAAGTTTATTTTCGTTTTACGAGCATA
CCACAGTCAGTACACTATGAATTGGAATAGACTTCAAATTGCTAAATGTT
ATTGTGCTGAATCGGATAAAGCACATGTACACTGTCCTTGTTCAATATGC
AGAAACAAAGCTGTCAATCCTGCTACTGAAATAAGACATCATAAAGAATT
TGAGGAACTGTTCGGGGAAAGCAATAGAAATGAATTACAACAAGTACAAG
AGAGTGAGGCAAGCATGCAATCTGTCCCTGGTCACTGTAGCAGCAATGTT
AGCAATAGTATCAACCAGTCAggaaattttattgatgaacaACAAGATCA
AGATGTTACTGAAAGTTCAGATAGTCTGCTGAGGAGGGGAGaacatgatg
atgatgatactGATGATGACAGTGACAATGTTGCTGATACTACTGATCAA
TCACACGATGAGAGTGCTGAGGAGAATAGAGATGGGAATATCAACGGAAT
TGCGGAACAAAATGCTAACagaaaCGAATTAGTGATTCCAAACTTGTTGC
GAACACTTATGTTGGCATCTGATATGAATGCATCTGTTAAAATGACAGAA
GAgctcccggggggggtactagggcaagatgggttacggggatgctccgc
tggtcagggtaccttttctaacctccacgagtcccaggtagggtcgcaaa
aac
Run BLAST on NCBI

transcript from alignment at sc0001963:9920..13524-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038914 ID=TCONS_00038914|Name=TCONS_00038914|organism=Clytia hemisphaerica|type=transcript|length=3605bp|location=Sequence derived from alignment at sc0001963:9920..13524- (Clytia hemisphaerica)
TTTAGAGCCATAATAAAAAATAAATGATAACAATGATAAAGATTATACTG
GTCAGTAAATTGTTTCTTTTACATTTTGTAAACACACACTAAAAGCGCGC
TTTTTTTAATTTTTGACAACCAGAAACAGATGAAAATCGAAAAAAAAAAG
AATCAACCAAAAGTTTCACGTTTCAAGTTTATTTTCGTTTTACGAGCATA
CCACAGTCAGTACACTATGAATTGGAATAGACTTCAAATTGCTAAATGTT
ATTGTGCTGAATCGGATAAAGCACATGTACACTGTCCTTGTTCAATATGC
AGAAACAAAGCTGTCAATCCTGCTACTGAAATAAGACATCATAAAGAATT
TGAGGAACTGTTCGGGGAAAGCAATAGAAATGAATTACAACAAGTACAAG
AGAGTGAGGCAAGCATGCAATCTGTCCCTGGTCACTGTAGCAGCAATGTT
AGCAATAGTATCAACCAGTCAGGAAATTTTATTGATGAACAACAAGATCA
AGATGTTACTGAAAGTTCAGATAGTCTGCTGAGGAGGGGAGAACATGATG
ATGATGATACTGATGATGACAGTGACAATGTTGCTGATACTACTGATCAA
TCACACGATGAGAGTGCTGAGGAGAATAGAGATGGGAATATCAACGGAAT
TGCGGAACAAAATGCTAACAGGTAAAATTTAATTTTTCACGGGTTATTGT
GCTTTTTCTGTTTTCCATATTTACTTTACCTTCTTGTGCCGTCGCCACAC
CCACAGTGTATAAAAAGTTTAAATGAATCAGACCTGATCAATCAAACTTT
TTGAACAAATCAAACAATTGAAGTTCAATCAAAAATGTAATCAATTGGGC
CATTCCAGTTTTTATTCTTTACCCCCCAATGGACGACATGGAATTTCCGT
AGCAAATTGCTTTCAAGAAAGTCCGGAATTTCCGTAACAAATTTACAAAA
TACCTATCAANTATCAAAACCGTGGAATTCCGTTACTGTAACCTAAAAAA
ATCATGGAATTCCAATACTTTAATGCAAAATTAAGTAAAATTCATGGAAT
TCCGATACTTCTCTANCATGGAATTCCAATACTTTAATGCAAAATTAAGT
AAAATTCATGGAATTCCGATACTTTCTCTATAAAGTTTGCCTGGAATTCC
GTGCCAAAATTTATTTCAAAAATTGATGTCATCCATTAGGGGGTAATTTT
TTTTTTCTGGAATGGCCCATTATATCAAACTCTCATACAGTTAGCCACAC
TAGCGTCCCGCCAAAATACGTATCAAAGATTAATGCTGCGAAAGTGCTAT
ATCGTTTACTTGACTCTCAAGCAAAAAAATGCACCGCAAAACTTCTAAAA
AGGGATTCATGAAAAGATAACCCGGCGCTTTTTAATGAAATTAACATTTT
CAAAAACCTTGAGAAATTGCCTAAAATTTGAGCCATAGATGAAAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCTCCCGGAA
ATTTTGCCGGACCTCAAACAATGACCCATTTACATGTGCGTAATTGTTTT
TACTTTAGCGTATAAACAAGGCCTTAAAAATCGAAGGGCTGTCTCGGGAA
TTGAATGACAAATTTTGGTTGGTTGAATTCTATCCCTGATATAGTCTTGT
CCGCAGTTTGTACAATATAAATAGCCGTCAGGCCAAAAAAAAAAGTAGTT
TCGTTTCCGGAAATGCGGGTGACGAAAAAAATCTCACCCGGGCGGCCGGA
AAATTTTTTTTTTTTTCAATTTTCCTAGAAAAACTCTAATTGACGTGTAC
GAAAAAATAATCCAGGTTCGATGTCTCTTTACTTGAAAAAACGAAATTTT
AAGAAGAAGCTGTACTCTAAGGTAATTCTATTCACAACTATTGGACAACT
CGTTAAATGGATCGTAAAATCGTAAAATGGAAAATAAACTCCTTATAAAT
CTTTGAATAAAATCGTTAAATGGATCGTAAAATCGTAAAATGGAAAAGTT
TTTTTCTATTTGCGGCCGGGTGAGATATATTTTTTTCCAAAAAAAAGTTC
ACCCGGCCGATTTCCGGAAACAAGACTACTTTTTTTTTGGCCTCAGAAAC
ATTATTCTGGCATGAATACGTGGCTCAGTGGATTGGGCATTTGATTTCCA
AACGACAGAACTTTGCATTTCCCCTTCAATTTTATTCCCCACCATATTTT
AAAATTTTTCGGTTCCCCTCCCTTTTTAGCTTTTGCGCCCAGTTATTTAA
CGATTTTGCAGTTCCCCCATATGGTTATAAACATGAAAATACCTTAAATC
GAGTTGTAAAGTTTTGGAAAGCTTGAAAATATAGCCTTGAAACTGCTTGA
AAATAAAGTTTTATTGAAAAGTTGGTTTGGTTCAAGTAAGAATTGCTGAT
TTTATTGCTTAAATAGGTTTTTTACAAGATTACCTTGAGATCAGTAAAGC
TCCCTGATCAAAATTTCCAATATTTATGGTTTCCCCCCTCTTTATTTCCC
CCCCATAACTAAAAAATGGGGTGCCAAAATCAGATTGAATCAGACGCCCC
CCTTTATAGAGGGGGGAGGGAGGATACTATGATACCTTTGACTTTATCGA
ATATTTCCTGTAGCAGCGCGTCAGAATCTGAAACAAAGTTTATCTCACCC
AATAAACGTGTGATTCACAGGCGAAAACCCTTTTCGTTTTCTCCAACAAA
TCAGAATGCATGTTATGAATTATTTGAGGAAACCCAGGCGAATGCTCACA
AAATAGTGGGAAAATTTAATGGGGGTCAATCTTATAGCTGGCGCTTTTTA
GTGCTTTAGTAAAGCAAAGTCAAAGTCGGGAGATCAAGGGAACAGCTCTA
TGAGAAATTATGGAAAGAGAAATGCACTCCAACCCTGACCCTAACCGATA
TAAAGAATTTTCACCCGCACGGATTGAATAACAAAAAATCTTCTTTCACC
CGTATGAAGGAGTCAGCACCGTAATGAACAGGAGTTTTATAGACCTTTGG
CTTATCATGATACCATTTTGACTTCATAGATTTTGAGTGTAGAAATTTAA
ACTTTTTGGCTGGTTTTGTATCTGTTCCAAAGTTTCAGATTATAATAAAG
TCAAAGGTTTTGTTTTTCTTGAATTGATCTCTCTCTATTATAATAGTACT
TTGAAGGAAAGTCCTAAGTTTGCAAAAGCTGCAATATTCTGTCTATATGA
GAAAAATTATTATTTCTTTTCAGAAACGAATTAGTGATTCCAAACTTGTT
GCGAACACTTATGTTGGCATCTGATATGAATGCATCTGTTAAAATGACAG
AAGAGCTCCCGGGGGGGGTACTAGGGCAAGATGGGTTACGGGGATGCTCC
GCTGGTCAGGGTACCTTTTCTAACCTCCACGAGTCCCAGGTAGGGTCGCA
AAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023382XLOC_023382Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038914-exon-sc0001963-1575043694:12854..13524TCONS_00038914-exon-sc0001963-1575043694:12854..13524Clytia hemisphaericaexon
TCONS_00038914-exon-sc0001963-1575043694:9920..10101TCONS_00038914-exon-sc0001963-1575043694:9920..10101Clytia hemisphaericaexon
TCONS_00038914-exon-sc0001963-1510915933:12854..13524TCONS_00038914-exon-sc0001963-1510915933:12854..13524Clytia hemisphaericaexon
TCONS_00038914-exon-sc0001963-1510915933:9920..10101TCONS_00038914-exon-sc0001963-1510915933:9920..10101Clytia hemisphaericaexon
TCONS_00038914-exon-sc0001963-1491911889:12854..13524TCONS_00038914-exon-sc0001963-1491911889:12854..13524Clytia hemisphaericaexon
TCONS_00038914-exon-sc0001963-1491911889:9920..10101TCONS_00038914-exon-sc0001963-1491911889:9920..10101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001963supercontigsc0001963:9920..13524 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.661654	1.07871	0.608148	0.15069	15.6866	10.4441	2.42441	2.34189	0.800107	2.24188	0.697905	0.812755	0.935152	0.987353	3.29723	1.31608	1.99068	1.00192	0.563024	1.95249	0	0	0.309323	0.945521	0.617559	0.746098	0.855933	0.568419	0.905624	1.30958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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