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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038912 ID=TCONS_00038912|Name=TCONS_00038912|organism=Clytia hemisphaerica|type=transcript|length=3541bp gggaagaGCTAATGCAATTTGTTGGAGACCTGATCAGTAATTTCTCAAAT ATAGATAACTGGCCATCAAGCCACACAACCGCCATCTCATTGTTGAAAGG TGAAGGTCTTTACTTCAATCCTTTTCACCATAGAATATGTTACAGCAAGG AAAATCATCCAATACATATCTACGTTGTTGGTGCAGAAGGAACATGTCCA GAATGTGACACTTTGCCAACGGTCAATAGATATTATTTGCCAATAAAGGA CAAAATGAAAAGATGGTTTTTGTCCAATGATACCACACACAAAATGCTTG GTCACTGGCAAAACAAGGATGCATGGCTTGGAAAAGATGGTGTGACGTAT CCCATAGATGAAATTTGGGAtggttatcgttttaaacaatTACAATGGTT CTGGGATCCTAATTCCAGATGGCCTTTACCACACATGTGCTCAAATTGTC AGAACTTTATCAATCTAATGGATATTGGGATTCAAAGTGACGATGAAACT GAGGTCAATGTAGATTGCTACCACTGTGATCACAGGCAAACAATCCAACC GAAATTTGCATCTGGCGATCCAAGGAATCTAGGATTTATCGGTCACTGGG ATGGATGGAGCCCAAATTTTGGAAGGGGTACTTCGCGTTCTACTGGCTCA ATCGAGATTTCAGTTGCCAACATGGAAAAACGTTATCGGTGTCAAAATGA GTATGTTTACACCTCAACTTTTGTTCCGGAACATTCTATGCCAAACAAAG aaccaaatgcattggatccATTTCTGGAACCTTTAGTTGATGAGTTAGTG GAATTATTCAATGAAGAAGTTCAATACCCCATCGATGTTGGTGATTTGAA GGCTGGAAAAGCAAAAATCAGGTGTATGCTCATCTGCTGGATAGGTGATT ATCCGGCTCAATGTCAAATTGGAAAGTTCTCGTGTAAAGGCACTTACGGT TGCCGTGTTGACAAATGTAAAGGAGAATCAGTAAATGATGGTTCAACCAA ATATTACATCAACAATCGCCATTACTTCACGAATCGCTGGGAGAAAAGGA ATTATGAAATTGAAATCAATACCATGGAAGAGATAGAACAACAACCTTCC GTTTATGCAAAACTTCGTCGTGCCAAAGAGACAGGCTATACCGGGCTGAG CGTTTTGACAAGGTTGAATTGCTTATATGGGTTCAATGTCTTACAAGATC TTGTCCACGATGTAATGCATCTCGTGGCCCTAAATCTATGCAGAAAGTTG TACAAacgtatttttcaaaatgagtcCTTTGACCTAGGTCATTTCCAATC AAAGTTGCAAGAATTTCCTTTCACTTCGGaAATGCTGGACGGACACTGCC CAAAAAATCCAATTAAACATTCATCCTGGACTGCAGAAGAGtggaaaaca ttttcttatCCTGTGGCAGAACTCGTCCTTGCTGATTCGAATTTAGATGC CGTAGAATACCATTTGGTGTGGCTGACTGCGCGTATCGTTGAATTGCTGT TCCATCACAGAGCAGGGCTCAAAAGACATGAGGTCGAAACCCTGAACAAG ATATGTTGGCGGAGGTTAATCTTTCTTGAAGAAGAGATCGGAAAAGAACA GTGCGTTATCACAGCACATAATTCGCTTCACATTGGGGAAAACCTGGAAC GCTTTGGTCATTGCGACAATACATGGTGTTGGGGTCCTGAGCGAGTTGTG AAGCGGTACAAAGATATTccaacaaattttaaaaatatcgaGGCATCGTA TGCTAAGCAAGAAATAAAGCGTGAGATACTGGCTATAGAAAAGAAAAACC GACGCATCACTCACAAAACCGATCGAGTCAACGAGATTGTATCCAGTTTG GAAGGTGCCAAAATGTTATGCTGTAATGGAGATAACAATCCAGTGGTGGT TTTCattggctcaacttcagtaacCAACGTCAAAATAGTCGATCAAGCTC TCCAGGAAACATTAGATTTTCTCGATATTGGAGTTTTCGCAGTATATCAA TGGTTCAGGTCCTGTTACCTAAGTACACAACAATCTCACCTCAAAATTGG CTGTTTCATCATGTTTCGGgatggtatcattggaaagataaaggaattca tttttgttaaaaacGAACACGCTTCGGTAAAGCTGATCAGAGTTGAAAAA TTCGAGTTTGATGATTTAAGAGTGCGAGAGATCAAAACCGTCCAGCCGAC CGGACAGGAAGATATTAAATTAGCAAATGATGTTCTTCGGAAAGTAATTG TTTATACATTGAATGCTTACATGTTGTTTTCAGACTTTGATAGACCCAGT TTCGAATTTAACTATGAAGTTTTATAAGTTTTTTATATACttatatttat aagaacatctatgTCATCAACTGTCATCGTTTAATCTTTTTGTTTCGTGA TAAGTTGTGGATGGTTTTAGtcattgttttaaaattttggatagCCGTAA TATCCCTCTTTATCGTAGAGATTTTGGCTAAAATTCAATGATCGATATTG AGTCACTTGAACTATGACTTTAGTCGGCCTTAGTCATATTAATTTGTTCT TGTGATTATGGATATTACGACTATCAATTACAGTCGATGTACTTATAATT TATTGTTAATTTCGAGGGAATTTTCATAATAGCTGAAGGCTACTTTTGGT CAGCACCTCTTAAACCGAGTTTAATTAAATTAGGATTTGTTAGCCAAGTA TACTTGAAAACTGACGGGTAAACGCTTGGACGTGACGAAAAACAAGACAC GTGTGAGGTGGGGGTTGGCCGTACTTTTCCTTCACAGCAAGTCACTAAGC AAGTTTTTAACTTCACTTGCCCTCGGTTGGTTAAATATTTACGGTCAACC TTCATGGAGCAGGTTGAAATTCAGCTGGGCTCCGTGTTCGTTGATGGCTG TCTTTACGGTTCCCGACGGAATACCTTCCGCCAGATCCTAATGTTGTTCA TTATTCTTTGGAGTAATGACGTAATGCTTCGGTGTCAAAAAACACATTTC AATACAGGTTAACTGTATTTACCATATCAAAAACAATCTTATTTCAAAGT CTGACCCCAAATCATAATTGTACTGAAACCATTTCACTCTTTCTTAATTA ATAGACCAGTGAGGGTTTGAACGATCGAGACGTCTAGTTTTGCTTTTTCT AGATCATAACTGGATGAGAACTActgttcaaaaaaatctttttatcgCTT ACAACTTAGCGGTCGATTCAAAACTGGGTGTTGTCTTACATCGCTACAGC CGGCCTTCCTACTCAAGACATGCATGCATAGACTCGCGACTAGCTCAGCG ATGACAGTCTACGTTTAGGTACATATTTGTAAAATAGGGTTAAATATTGT GTATAAGTATATCTTTTGTGACATAGTTTATCCTTTTTATTAATAATGTT AGTATATGTCATGCGATTTCTAATTTTTAAAATGCAAACGTCTGTTTGAA TagccctttttttaaatgacgtcaCGGACATcatttgcctcgttttgaaa ttattgccatggtgattaactcccagcggattttattaaaa Run BLAST on NCBI transcript from alignment at sc0001963:4002..9543- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038912 ID=TCONS_00038912|Name=TCONS_00038912|organism=Clytia hemisphaerica|type=transcript|length=5542bp|location=Sequence derived from alignment at sc0001963:4002..9543- (Clytia hemisphaerica) GGGAAGAGCTAATGCAATTTGTTGGAGACCTGATCAGTAATTTCTCAAAT
ATAGATAACTGGCCATCAAGCCACACAACCGCCATCTCATTGTTGAAAGG
TGAAGGTCTTTACTTCAATCCTTTTCACCATAGAATATGTTACAGCAAGG
AAAATCATCCAATACATATCTACGTTGTTGGTGCAGAAGGAACATGTCCA
GAATGTGACACTTTGCCAACGGTCAATAGATATTATTTGCCAATAAAGGA
CAAAATGAAAAGATGGTTTTTGTCCAATGATACCACACACAAAATGCTTG
GTCACTGGCAAAACAAGGATGCATGGCTTGGAAAAGATGGTGTGACGTAT
CCCATAGATGAAATTTGGGATGGTTATCGTTTTAAACAATTACAATGGTT
CTGGGATCCTAATTCCAGATGGCCTTTACCACACATGTGCTCAAATTGTC
AGAACTTTATCAATCTAATGGATATTGGGATTCAAAGTGACGATGAAACT
GAGGTCAATGTAGATTGCTACCACTGTGATCACAGGCAAACAATCCAACC
GAAATTTGCATCTGGCGATCCAAGGAATCTAGGATTTATCGGTCACTGGG
ATGGATGGAGCCCAAATTTTGGAAGGGGTACTTCGCGTTCTACTGGTGAG
TGTATTTTCACCTAATTAGCAAGTATTATTGATTCTAATTTATTTTATTG
AGAACAAAAAAGTGCTTTTGAAAGGCATTCAGCTAGTATCACTACTTAAT
TGGCAGTTGGCCAACATGCGATTTGTGCTATTATAGCAAAAGCCACATTA
TTCTTCGTCCCTTAGGCTCAATCGAGATTTCAGTTGCCAACATGGAAAAA
CGTTATCGGTGTCAAAATGAGTATGTTTACACCTCAACTTTTGTTCCGGA
ACATTCTATGCCAAACAAAGAACCAAATGCATTGGATCCATTTCTGGAAC
CTTTAGTTGATGAGTTAGTGGAATTATTCAATGAAGGTATGAAGTTGAGA
AAAAGTTCACAGGGTGTTGAAAGCCATTTGAGAGTGGGTATTGTCCAAAT
GCTTTGGGTTTTCTATAAATATTTTAAGTATCCTTGTTGAAAAAATAACA
AGGTAAATTGTAAATTTTTTGCCTGCGATTTCATTCTTTTATCTTTTTCA
TCATAACTTTGTAAAACGTTTGCCTGCCGCATTGCTTTTCTCACTCTTAA
TCATGTTATGTGTTCCAAACTTTATTTGTAAGGAATTAAATTGGTGTCAA
ACTTTTGTCAAGACAATAAATCTGGTGGGGGTCCTTCATTTTGTAATTTG
GTGCAACTTTTGGAGTTTTCCTACTTAAGAGGGTTGTTTACCTGAAAGCA
CAAAAATAAGGCCACCATGCCTCCTCCAAAATAAACTTATCTCTTGATAT
GTCCTTGAGGGTAAAATATTATCTATATTTACAGACAGCCAAGAGGAAAT
TGAGTAGCTCTAGAGCTGTTATATCTATACTGATGTCTTTTTCCTTTGTT
TAGGTGTAGAAGTTCAATACCCCATCGATGTTGGTGATTTGAAGGCTGGA
AAAGCAAAAATCAGGTGTATGCTCATCTGCTGGATAGGTGATTATCCGGC
TCAATGTCAAATTGGAAAGTTCTCGTGTAAAGGCACTTACGGTTGCCGTG
TTGACAAATGTAAAGGTAATCTCTAAGCTATTTTACTGTATTGGTTTGAC
CTTTCAAAATATAAACTCCTACATTTTTTTTATAAGCAACCCAGTTTCTA
AGGGTCCAGCCCTGCATGTTGCTGTTTGTAGGGTTATGATGTTTCTAGGC
TTTGGGATTAGCTGATTTGCTTTTCCTTGTATAAAAAGTTAATGAGAGTA
CAACTTTTTAGAGCCAATTCAAAAAAAGTAACAGGCATACACAGATACAT
CGCCCTTCCATTCATTGTGAATGTTCCTAGGCTACCTGCTACAAATTGAA
GTTTCTGGTGTCAGGTTGTTTTGATGAAGCCATCCTAGTTTTTGATTTGG
ATCTTTCTCTCTTGATCTTTCTCTGGTATTTTAATTAAGGTTTCAGAATT
ACTCTTGATTATTAGTCATTAGGTAGTACTTTTATCTGCTTTTATAAGAT
AAATTTTTGGGAGAACAAATTTTCATTCCTCCAAAATGAAAGCTTAAAAT
TGTTATTGTTTATATTTCTTGCTCAGGAGAATCAGTAAATGATGGTTCAA
CCAAATATTACATCAACAATCGCCATTACTTCACGAATCGCTGGGAGAAA
AGGAATTATGAAATTGAAATCAATACCATGGAAGAGATAGAACAACAACC
TTCCGTTTATGCAAAACTTCGTCGTGCCAAAGAGACAGGCTATACCGGGC
TGAGCGTTTTGACAAGGTTGAATTGCTTATATGGGTTCAATGTCTTACAA
GATCTTGTCCACGATGTAATGCATCTCGTGGCCCTAAATCTATGCAGAAA
GTTGTACAAACGTATTTTTCAAAATGAGTCCTTTGACCTAGGTCATTTCC
AATCAAAGTTGCAAGAATTTCCTTTCACTTCGGGTAAGTTTACTTTTGGA
CTGTAATAAGATCGTATATATTATTTTCCGTTAAATTTACAGAAAGACCT
TTAAGAAGAAATTTTGGCGAATGATTGCGCTATTTTCCAATTTAACACGA
ATAGGCAGAGTTCATTTTGGTGAGCCAAAAAAAATTTCAAAATTAAAACT
ACTTCTCTTAAATAGGAGCTAATGGACTCCCACTCATTAACCTTCTAAGT
TCTTTCAAGATATCATAACAATATCTATCGATCACTTTTTTTTTCATTAT
AGAAATGCTGGACGGACACTGCCCAAAAAATCCAATTAAACATTCATCCT
GGACTGCAGAAGAGTGGAAAACATTTTCTTATCCTGTGGCAGAACTCGTC
CTTGCTGATTCGAATTTAGATGCCGTAGAATACCATTTGGTGTGGCTGAC
TGCGCGTATCGTTGAATTGCTGTTCCATCACAGAGCAGGGCTCAAAAGAC
ATGAGGTCGAAACCCTGAACAAGATATGTTGGCGGAGGTTAATCTTTCTT
GAAGAAGAGATCGGAAAAGAACAGTGCGTTATCACAGCACATAATTCGCT
TCACATTGGGGAAAACCTGGAACGCTTTGGTCATTGCGACAATACATGGT
GTTGGGGTCCTGAGCGAGTTGTGAAGCGGTAAGTGATCCCGTTCTAAAGA
TAAGCATTTCTATCCAAGATGTTTTTGGCAATATCTGTTTTATACTGTTA
GCGTTTAAAAGCTATTAAAAATTTCAAAAATTACTTCCTCAGGTACAAAG
ATATTCCAACAAATTTTAAAAATATCGAGGCATCGTATGCTAAGCAAGAA
ATAAAGCGTGAGATACTGGCTATAGAAAAGAAAAACCGACGCATCACTCA
CAAAACCGATCGAGTCAACGAGGTAAGTTCAGTTCGTCCTTTACTCGAAC
CAGAGAGATATAATAAAAACTAGTTGTGTAAATTGTTGTATCCGGGATGG
TAAAATTGTAGACTCTCGTGAAAAGCTCTTCAAAGTACATACTTACTTTA
ATGGATAAACTTTTGCGGGAATTAAATTTCGCGGATTTCCCAATGGAAAT
TTGGATGGGACCTCTTCCGCGAAATATTTCAAAACAAAACTCAAAATATG
TCAGATAGATACTATTTGAATGGTTATGCATCAAAGAAGCGTTAATAATG
TGTATTTCAACAACATGATTTGGCAGTAAAAGCCACAAAATCGTGGAAAT
ATTGCCACCAAATAGTGCCTTTCGCGAAATCTAATCCCCGCGAAAGTTTG
TCCTATTAAAAGTAAAACTATCATCATATTTTACAGATTGTATCCAGTTT
GGAAGGTGCCAAAATGTTATGCTGTAATGGAGATAACAATCCAGTGGTGG
TTTTCATTGGCTCAACTTCAGTAACCAACGTCAAAATAGTCGATCAAGCT
CTCCAGGAAACATTAGATTTTCTCGATATTGGAGTTTTCGCAGTATATCA
ATGGTTCAGGTCCTGTTACCTAAGTACACAACAATCTCACCTCAAAATTG
GCTGTTTCATCATGTTTCGGGATGGTATCATTGGAAAGATAAAGGAATTC
ATTTTTGTTAAAAACGAACACGCTTCGGTAAAGCTGATCAGAGTTGAAAA
ATTCGAGTTTGATGATTTAAGAGTGCGAGAGATCAAAACCGTCCAGCCGA
CCGGACAGGAAGATATTAAATTAGCAAATGATGTTCTTCGGAAAGTAATT
GTTTATACATTGAATGCTTACATGTTGTTTTCAGACTTTGATAGACCCAG
TTTCGAATTTAACTATGAAGTTTTATAAGTTTTTTATATACTTATATTTA
TAAGAACATCTATGTCATCAACTGTCATCGTTTAATCTTTTTGTTTCGTG
ATAAGTTGTGGATGGTTTTAGTCATTGTTTTAAAATTTTGGATAGCCGTA
ATATCCCTCTTTATCGTAGAGATTTTGGCTAAAATTCAATGATCGATATT
GAGTCACTTGAACTATGACTTTAGTCGGCCTTAGTCATATTAATTTGTTC
TTGTGATTATGGATATTACGACTATCAATTACAGTCGATGTACTTATAAT
TTATTGTTAATTTCGAGGGAATTTTCATAATAGCTGAAGGCTACTTTTGG
TCAGCACCTCTTAAACCGAGTTTAATTAAATTAGGATTTGTTAGCCAAGT
ATACTTGAAAACTGACGGGTAAACGCTTGGACGTGACGAAAAACAAGACA
CGTGTGAGGTGGGGGTTGGCCGTACTTTTCCTTCACAGCAAGTCACTAAG
CAAGTTTTTAACTTCACTTGCCCTCGGTTGGTTAAATATTTACGGTCAAC
CTTCATGGAGCAGGTTGAAATTCAGCTGGGCTCCGTGTTCGTTGATGGCT
GTCTTTACGGTTCCCGACGGAATACCTTCCGCCAGATCCTAATGTTGTTC
ATTATTCTTTGGAGTAATGACGTAATGCTTCGGTGTCAAAAAACACATTT
CAATACAGGTTAACTGTATTTACCATATCAAAAACAATCTTATTTCAAAG
TCTGACCCCAAATCATAATTGTACTGAAACCATTTCACTCTTTCTTAATT
AATAGACCAGTGAGGGTTTGAACGATCGAGACGTCTAGTTTTGCTTTTTC
TAGATCATAACTGGATGAGAACTACTGTTCAAAAAAATCTTTTTATCGCT
TACAACTTAGCGGTCGATTCAAAACTGGGTGTTGTCTTACATCGCTACAG
CCGGCCTTCCTACTCAAGACATGCATGCATAGACTCGCGACTAGCTCAGC
GATGACAGTCTACGTTTAGGTACATATTTGTAAAATAGGGTTAAATATTG
TGTATAAGTATATCTTTTGTGACATAGTTTATCCTTTTTATTAATAATGT
TAGTATATGTCATGCGATTTCTAATTTTTAAAATGCAAACGTCTGTTTGA
ATAGCCCTTTTTTTAAATGACGTCACGGACATCATTTGCCTCGTTTTGAA
ATTATTGCCATGGTGATTAACTCCCAGCGGATTTTATTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00038912-exon-sc0001963-1575043694:8899..9543 | TCONS_00038912-exon-sc0001963-1575043694:8899..9543 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1575043694:8558..8728 | TCONS_00038912-exon-sc0001963-1575043694:8558..8728 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1575043694:7879..8034 | TCONS_00038912-exon-sc0001963-1575043694:7879..8034 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1575043694:7011..7367 | TCONS_00038912-exon-sc0001963-1575043694:7011..7367 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1575043694:6366..6741 | TCONS_00038912-exon-sc0001963-1575043694:6366..6741 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1575043694:6122..6251 | TCONS_00038912-exon-sc0001963-1575043694:6122..6251 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1575043694:4002..5707 | TCONS_00038912-exon-sc0001963-1575043694:4002..5707 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1510915933:8899..9543 | TCONS_00038912-exon-sc0001963-1510915933:8899..9543 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1510915933:8558..8728 | TCONS_00038912-exon-sc0001963-1510915933:8558..8728 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1510915933:7879..8034 | TCONS_00038912-exon-sc0001963-1510915933:7879..8034 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1510915933:7011..7367 | TCONS_00038912-exon-sc0001963-1510915933:7011..7367 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1510915933:6366..6741 | TCONS_00038912-exon-sc0001963-1510915933:6366..6741 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1510915933:6122..6251 | TCONS_00038912-exon-sc0001963-1510915933:6122..6251 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1510915933:4002..5707 | TCONS_00038912-exon-sc0001963-1510915933:4002..5707 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1491911889:8899..9543 | TCONS_00038912-exon-sc0001963-1491911889:8899..9543 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1491911889:8558..8728 | TCONS_00038912-exon-sc0001963-1491911889:8558..8728 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1491911889:7879..8034 | TCONS_00038912-exon-sc0001963-1491911889:7879..8034 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1491911889:7011..7367 | TCONS_00038912-exon-sc0001963-1491911889:7011..7367 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1491911889:6366..6741 | TCONS_00038912-exon-sc0001963-1491911889:6366..6741 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1491911889:6122..6251 | TCONS_00038912-exon-sc0001963-1491911889:6122..6251 | Clytia hemisphaerica | exon |
| TCONS_00038912-exon-sc0001963-1491911889:4002..5707 | TCONS_00038912-exon-sc0001963-1491911889:4002..5707 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0001963 | supercontig | sc0001963:4002..9543 - |
Blast
The following BLAST results are available for this feature:
|