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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038907 ID=TCONS_00038907|Name=TCONS_00038907|organism=Clytia hemisphaerica|type=transcript|length=1921bp
GAGGATCTTAAGATGTGGCTAGACTTTCTTAAAAGTTGGAATGgtaaaag
tttctttttagAAAGAGAGCTGACTTTGGCAAGTGATCTAAAGTTTTTTA
CTGATGCTTCCAGTACGATAGGTTATGGTGGCTGTTTCGGTAGACAGTGG
TTCTGTGACCGTTGGGACGAGGACGATGTCATGCCATCCATGGCTGCAAG
GGAGTTGTACCCGATAGTTTTGTCAGCAATCTTTTGGGGACAGGCATGGG
GAAGTAAACGCATTCAGGTCTTTTGTGATAACGAGGGAACGGTTGCCCTG
ATCAACAAAGGTTACTCCAGTGACAAGATTATAGCTAAAATGTTAAGGTG
CTTGACACTACAGTGTATGACAAACAACTTTAATATCAGGGCAACCCACA
TACCAGGTAAGAAGAACGTTAAAGCTGATCTAATCTCTCGTTTACAGTTA
GTTCGATTCAGAAAGATGTTCCCGGATATGGACAGCGAACCAATCAAGGT
GACGGCCGCCGTAAAGAACTTAATCGGGTTGTGAAGTCTTTCGAAAAAGA
AGCACTCTCGTCGGGTACGAAGAAGACTTACAACCAAGGCGTCAAAACGT
ACCTCGAGTTCCAGAAATACATCAAGGAAGACCCAGAAAATGCCCCTCGC
CCTGACATTGATAGGTTGTTACTGTTTATTGCTTACCttgcttatttaaa
aaaactttcttataGATGTATCCGTACATATGTTTACAGTGTGCGAAACT
GGACAATGGAAAATGGCGGTCCCGACCCAACAACTTCGAAGAGCCATCGA
AGGAGACATAGGTTAAAGCAGTTGTTGGCAGGGGTGCGGCGAGCTTGTCA
ATCTAAGCGAAATGTCAAGAAAGCGTTAAAGCGATGCCACGTTAAAAAAT
TGACGCGCAAACTTGATACTACAAAGCTAATCgattttaacacaaaaact
ATGTTCAAAGCAGCATTACTTCTCGCATTTTTTGGGTTCTTACGTTGTAG
CGAATACACACGGACCGCCCTAAATCATAAATCGTGTCTGCGCCGAAAAG
ACATGAAGGTCAACCGCGATCACTTAAAAATTACTCTCCGAAAAACCAAG
TCTAACCAGTTCAGTTCCTCGGTTGTAAGAGTATACGGTAATGGAACGGA
AATCTGTCCACTAATGGCCATGAAAGATTATTTAGCTATTAGGCATAAGA
AAGCGTCAGAACCACTTTTCTGGAAAAGAAATAGTCCGTTAACTTATTCG
TCCTTCAACTCCATACTGAAACAGCTTCTCTCTGCAGCAAAACTAAATCC
TACGAAATACTCCTCTCACTCTTTGAGGGCAGGAGCAGCGACAACTGCTG
CGAATTGTGGAATTCCTTCCTGGTTAGTCCAAAAACTTGGCCGATGGCAC
TCCGAATGCTACAAAATCTACATTAGAGACCCGGTGAAGTCTATTAAGAA
TGCTCAGCTGTCCATGTCTATGaaatagtttttgtttttgtctctTTAAT
TTTGTTACTATGCTTTGTGTGTGTTTATGTGTGTGTTTGTATGTATGTGT
TTATGTCCCAGGTCGGGTCCAAGTTAAGGGGAGTCACTTCTTTGGAGGGA
ATTTCGAACGGCGGTTCGGTTCTCTCAGAAACCTTGACGGCGGTCTGGTT
TCAACCCTTAAAGTGTCTCAGGTCGGGTTCCTAACTCTGAGTAAAGGGGA
GTCACTTCTTTGGAGGGAATTTCGAACGGCGGTTCGGTTCTCTCAGAAAC
CTTGACGGCGGTCGGGTTTCAACCCCAAAAGTGTCTCAGGTCGTCCGGTT
GTGTGCTGTGGGTTATTCTAGAGAAGAgtgcaaaagaaaaaataaataaa
tagataaatataataaaatttgGTCTTTTCTAATTTCCTTTTGGCTACTG
GGTCACATTTATCTAACATTT Run BLAST on NCBI protein sequence of TCONS_00038907-protein >TCONS_00038907-protein ID=TCONS_00038907-protein|Name=TCONS_00038907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
MENGGPDPTTSKSHRRRHRLKQLLAGVRRACQSKRNVKKALKRCHVKKLT
RKLDTTKLIDFNTKTMFKAALLLAFFGFLRCSEYTRTALNHKSCLRRKDM
KVNRDHLKITLRKTKSNQFSSSVVRVYGNGTEICPLMAMKDYLAIRHKKA
SEPLFWKRNSPLTYSSFNSILKQLLSAAKLNPTKYSSHSLRAGAATTAAN
CGIPSWLVQKLGRWHSECYKIYIRDPVKSIKNAQLSMSMK Run BLAST on NCBI transcript from alignment at sc0001961:27314..29234 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038907 ID=TCONS_00038907|Name=TCONS_00038907|organism=Clytia hemisphaerica|type=transcript|length=1921bp|location=Sequence derived from alignment at sc0001961:27314..29234 (Clytia hemisphaerica)
AAATGTTAGATAAATGTGACCCAGTAGCCAAAAGGAAATTAGAAAAGACc
aaattttattatatttatctatttatttattttttcttttgcacTCTTCT
CTAGAATAACCCACAGCACACAACCGGACGACCTGAGACACTTTTGGGGT
TGAAACCCGACCGCCGTCAAGGTTTCTGAGAGAACCGAACCGCCGTTCGA
AATTCCCTCCAAAGAAGTGACTCCCCTTTACTCAGAGTTAGGAACCCGAC
CTGAGACACTTTAAGGGTTGAAACCAGACCGCCGTCAAGGTTTCTGAGAG
AACCGAACCGCCGTTCGAAATTCCCTCCAAAGAAGTGACTCCCCTTAACT
TGGACCCGACCTGGGACATAAACACATACATACAAACACACACATAAACA
CACACAAAGCATAGTAACAAAATTAAagagacaaaaacaaaaactatttC
ATAGACATGGACAGCTGAGCATTCTTAATAGACTTCACCGGGTCTCTAAT
GTAGATTTTGTAGCATTCGGAGTGCCATCGGCCAAGTTTTTGGACTAACC
AGGAAGGAATTCCACAATTCGCAGCAGTTGTCGCTGCTCCTGCCCTCAAA
GAGTGAGAGGAGTATTTCGTAGGATTTAGTTTTGCTGCAGAGAGAAGCTG
TTTCAGTATGGAGTTGAAGGACGAATAAGTTAACGGACTATTTCTTTTCC
AGAAAAGTGGTTCTGACGCTTTCTTATGCCTAATAGCTAAATAATCTTTC
ATGGCCATTAGTGGACAGATTTCCGTTCCATTACCGTATACTCTTACAAC
CGAGGAACTGAACTGGTTAGACTTGGTTTTTCGGAGAGTAATTTTTAAGT
GATCGCGGTTGACCTTCATGTCTTTTCGGCGCAGACACGATTTATGATTT
AGGGCGGTCCGTGTGTATTCGCTACAACGTAAGAACCCAAAAAATGCGAG
AAGTAATGCTGCTTTGAACATagtttttgtgttaaaatcGATTAGCTTTG
TAGTATCAAGTTTGCGCGTCAATTTTTTAACGTGGCATCGCTTTAACGCT
TTCTTGACATTTCGCTTAGATTGACAAGCTCGCCGCACCCCTGCCAACAA
CTGCTTTAACCTATGTCTCCTTCGATGGCTCTTCGAAGTTGTTGGGTCGG
GACCGCCATTTTCCATTGTCCAGTTTCGCACACTGTAAACATATGTACGG
ATACATCtataagaaagtttttttaaataagcaaGGTAAGCAATAAACAG
TAACAACCTATCAATGTCAGGGCGAGGGGCATTTTCTGGGTCTTCCTTGA
TGTATTTCTGGAACTCGAGGTACGTTTTGACGCCTTGGTTGTAAGTCTTC
TTCGTACCCGACGAGAGTGCTTCTTTTTCGAAAGACTTCACAACCCGATT
AAGTTCTTTACGGCGGCCGTCACCTTGATTGGTTCGCTGTCCATATCCGG
GAACATCTTTCTGAATCGAACTAACTGTAAACGAGAGATTAGATCAGCTT
TAACGTTCTTCTTACCTGGTATGTGGGTTGCCCTGATATTAAAGTTGTTT
GTCATACACTGTAGTGTCAAGCACCTTAACATTTTAGCTATAATCTTGTC
ACTGGAGTAACCTTTGTTGATCAGGGCAACCGTTCCCTCGTTATCACAAA
AGACCTGAATGCGTTTACTTCCCCATGCCTGTCCCCAAAAGATTGCTGAC
AAAACTATCGGGTACAACTCCCTTGCAGCCATGGATGGCATGACATCGTC
CTCGTCCCAACGGTCACAGAACCACTGTCTACCGAAACAGCCACCATAAC
CTATCGTACTGGAAGCATCAGTAAAAAACTTTAGATCACTTGCCAAAGTC
AGCTCTCTTTctaaaaagaaacttttacCATTCCAACTTTTAAGAAAGTC
TAGCCACATCTTAAGATCCTC Coding sequence (CDS) from alignment at sc0001961:27314..29234 >TCONS_00038907 ID=TCONS_00038907|Name=TCONS_00038907|organism=Clytia hemisphaerica|type=CDS|length=723bp|location=Sequence derived from alignment at sc0001961:27314..29234 (Clytia hemisphaerica)
ctatttCATAGACATGGACAGCTGAGCATTCTTAATAGACTTCACCGGGT
CTCTAATGTAGATTTTGTAGCATTCGGAGTGCCATCGGCCAAGTTTTTGG
ACTAACCAGGAAGGAATTCCACAATTCGCAGCAGTTGTCGCTGCTCCTGC
CCTCAAAGAGTGAGAGGAGTATTTCGTAGGATTTAGTTTTGCTGCAGAGA
GAAGCTGTTTCAGTATGGAGTTGAAGGACGAATAAGTTAACGGACTATTT
CTTTTCCAGAAAAGTGGTTCTGACGCTTTCTTATGCCTAATAGCTAAATA
ATCTTTCATGGCCATTAGTGGACAGATTTCCGTTCCATTACCGTATACTC
TTACAACCGAGGAACTGAACTGGTTAGACTTGGTTTTTCGGAGAGTAATT
TTTAAGTGATCGCGGTTGACCTTCATGTCTTTTCGGCGCAGACACGATTT
ATGATTTAGGGCGGTCCGTGTGTATTCGCTACAACGTAAGAACCCAAAAA
ATGCGAGAAGTAATGCTGCTTTGAACATagtttttgtgttaaaatcGATT
AGCTTTGTAGTATCAAGTTTGCGCGTCAATTTTTTAACGTGGCATCGCTT
TAACGCTTTCTTGACATTTCGCTTAGATTGACAAGCTCGCCGCACCCCTG
CCAACAACTGCTTTAACCTATGTCTCCTTCGATGGCTCTTCGAAGTTGTT
GGGTCGGGACCGCCATTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038907-exon-sc0001961-1491911889:27314..29234 | TCONS_00038907-exon-sc0001961-1491911889:27314..29234 | Clytia hemisphaerica | exon |
| TCONS_00038907-exon-sc0001961-1510915933:27314..29234 | TCONS_00038907-exon-sc0001961-1510915933:27314..29234 | Clytia hemisphaerica | exon |
| TCONS_00038907-exon-sc0001961-1575043694:27314..29234 | TCONS_00038907-exon-sc0001961-1575043694:27314..29234 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001961 | supercontig | sc0001961:27314..29234 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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