TCONS_00038904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038904
Unique NameTCONS_00038904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038904 ID=TCONS_00038904|Name=TCONS_00038904|organism=Clytia hemisphaerica|type=transcript|length=280bp
NNGCCTTGAGGTACCCCAAGTAAGATATCAAGCCATGAGCTTAGATGTGA
CCCTACACGAACTCTATGCTTTCGATTGCTGAGATAACTGTGTATTAGTC
TAACAGCACTCTCACTGAGTCCGTAAGCAGAGAGTTTTGCAAGAAGTAGA
TTATGAGGCAAGCAATCAAAGGCTATCGACAAGTCAATCAAGACCGCTCC
CACTTTTAAATTGTTTGCTATAGCACTTTGCCATTGTCTGATCATATTTA
AAATGGCATGTTGAGTGCTATGGCCTTTTC
Run BLAST on NCBI

transcript from alignment at sc0001961:1374..1653

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038904 ID=TCONS_00038904|Name=TCONS_00038904|organism=Clytia hemisphaerica|type=transcript|length=280bp|location=Sequence derived from alignment at sc0001961:1374..1653 (Clytia hemisphaerica)
GAAAAGGCCATAGCACTCAACATGCCATTTTAAATATGATCAGACAATGG
CAAAGTGCTATAGCAAACAATTTAAAAGTGGGAGCGGTCTTGATTGACTT
GTCGATAGCCTTTGATTGCTTGCCTCATAATCTACTTCTTGCAAAACTCT
CTGCTTACGGACTCAGTGAGAGTGCTGTTAGACTAATACACAGTTATCTC
AGCAATCGAAAGCATAGAGTTCGTGTAGGGTCACATCTAAGCTCATGGCT
TGATATCTTACTTGGGGTACCTCAAGGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023377XLOC_023377Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038904-exon-sc0001961-1491911889:1374..1653TCONS_00038904-exon-sc0001961-1491911889:1374..1653Clytia hemisphaericaexon
TCONS_00038904-exon-sc0001961-1510915933:1374..1653TCONS_00038904-exon-sc0001961-1510915933:1374..1653Clytia hemisphaericaexon
TCONS_00038904-exon-sc0001961-1575043694:1374..1653TCONS_00038904-exon-sc0001961-1575043694:1374..1653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001961supercontigsc0001961:1374..1653 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.239	0.547629	31.9811	27.3948	9.53386	9.52051	2.49958	5.16021	2.50431	1.64624	0.32879	0	0.561439	0.60251	0.742243	0	1.05105	1.09985	3.34589	1.39887	0.566835	1.03067	1.59235	4.73711	0	1.4469	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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