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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038902 ID=TCONS_00038902|Name=TCONS_00038902|organism=Clytia hemisphaerica|type=transcript|length=676bp
TGTCTCTTTTTTTCTTAGATACAAAAGTTTGCCGACAAATTGCAAAAACA
TCGAGGCAACCTATGCCAAGCTAGAAGTCAAACGAGAAATACTGGCAGTC
GCTGAAGCGTTTGAAAAACGAGTAACATATAAGGTGGACAGAATCAATGG
TATCGTATCCAGTGTTGAAGCTGCAAAGAAATTTCTATTCTCGGCTGACT
GTCCACTCGTTTTTATCGGTATAACTTCATTGACAAATGTTAGGATAGCA
GACGATGCCATTCGAGAGGCAATGACGTTGCTTGGACGTGGAGATGTCGA
TGTCTATCAGCTTTTTAGATCGTgttatttaaagaaaaacaacgaATTAC
TTAAGGATGAatcgtttgtttttttaaattctggaTATGTTGGAAAAATA
TCAGAGTTTATTTATGTCAAAAACAACAATGGTTCCTTCAAATTTGCTCG
CGTTCAACTATTCTCTTTTCAACACTATATCAACCCGCAAGATATACCTA
CGCTTGACAATACTGGTCGTACAGCCATAGTCAAAATGGAATCTGTTATG
CGAAAGGTCATTGCCTACTGTAGGAATAACGAGACATTATTTTGCATCGA
CTACAACAAGCCTAACTTTTACTTTCCTTTCGAGGCGCTACCTTAATTTG
GGTTTTTTGAACCTTTGAACCAAAGC Run BLAST on NCBI protein sequence of TCONS_00038902-protein >TCONS_00038902-protein ID=TCONS_00038902-protein|Name=TCONS_00038902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
VSFFLRYKSLPTNCKNIEATYAKLEVKREILAVAEAFEKRVTYKVDRING
IVSSVEAAKKFLFSADCPLVFIGITSLTNVRIADDAIREAMTLLGRGDVD
VYQLFRSCYLKKNNELLKDESFVFLNSGYVGKISEFIYVKNNNGSFKFAR
VQLFSFQHYINPQDIPTLDNTGRTAIVKMESVMRKVIAYCRNNETLFCID
YNKPNFYFPFEALP Run BLAST on NCBI transcript from alignment at sc0001961:32932..33960- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038902 ID=TCONS_00038902|Name=TCONS_00038902|organism=Clytia hemisphaerica|type=transcript|length=1029bp|location=Sequence derived from alignment at sc0001961:32932..33960- (Clytia hemisphaerica)
TGTCTCTTTTTTTCTTAGATACAAAAGTTTGCCGACAAATTGCAAAAACA
TCGAGGCAACCTATGCCAAGCTAGAAGTCAAACGAGAAATACTGGCAGTC
GCTGAAGCGTTTGAAAAACGAGTAACATATAAGGTGGACAGAATCAATGG
TGTAAGCATAAAATTCTGTTTTGGGGCATCAAGAAAGTTGAATGATCATT
TTAAATTTTTTTTAAATCTATTTCCCCGTAAAAAAAATTTTTGTCATAAA
TCCTATTTAAATTTAGAAGGGCTGAAACGATACGATATTTATGAATGGAG
ATTTTTCGATTTAAATTTGGGATCGGGTTTAACTAAGCATTATATAATGT
CCCCAAACTACAAGAGAAACTCCAGAAGAGTCTTACTTTTTAAACAAGTC
GGTGTGTTAATGAAATTAAGCAAAAAAAAGATACGTATTATTTTCTTGCG
TGTTAAGTTACTTAACTAAGGTTGTTAAATTGCCTTCCTACATCCGTACT
TTAGATCGTATCCAGTGTTGAAGCTGCAAAGAAATTTCTATTCTCGGCTG
ACTGTCCACTCGTTTTTATCGGTATAACTTCATTGACAAATGTTAGGATA
GCAGACGATGCCATTCGAGAGGCAATGACGTTGCTTGGACGTGGAGATGT
CGATGTCTATCAGCTTTTTAGATCGTGTTATTTAAAGAAAAACAACGAAT
TACTTAAGGATGAATCGTTTGTTTTTTTAAATTCTGGATATGTTGGAAAA
ATATCAGAGTTTATTTATGTCAAAAACAACAATGGTTCCTTCAAATTTGC
TCGCGTTCAACTATTCTCTTTTCAACACTATATCAACCCGCAAGATATAC
CTACGCTTGACAATACTGGTCGTACAGCCATAGTCAAAATGGAATCTGTT
ATGCGAAAGGTCATTGCCTACTGTAGGAATAACGAGACATTATTTTGCAT
CGACTACAACAAGCCTAACTTTTACTTTCCTTTCGAGGCGCTACCTTAAT
TTGGGTTTTTTGAACCTTTGAACCAAAGC Coding sequence (CDS) from alignment at sc0001961:32932..33960- >TCONS_00038902 ID=TCONS_00038902|Name=TCONS_00038902|organism=Clytia hemisphaerica|type=CDS|length=1290bp|location=Sequence derived from alignment at sc0001961:32932..33960- (Clytia hemisphaerica)
ATCGTATCCAGTGTTGAAGCTGCAAAGAAATTTCTATTCTCGGCTGACTG
TCCACTCGTTTTTATCGGTATAACTTCATTGACAAATGTTAGGATAGCAG
ACGATGCCATTCGAGAGGCAATGACGTTGCTTGGACGTGGAGATGTCGAT
GTCTATCAGCTTTTTAGATCGTGTTATTTAAAGAAAAACAACGAATTACT
TAAGGATGAATCGTTTGTTTTTTTAAATTCTGGATATGTTGGAAAAATAT
CAGAGTTTATTTATGTCAAAAACAACAATGGTTCCTTCAAATTTGCTCGC
GTTCAACTATTCTCTTTTCAACACTATATCAACCCGCAAGATATACCTAC
GCTTGACAATACTGGTCGTACAGCCATAGTCAAAATGGAATCTGTTATGC
GAAAGGTCATTGCCTACTGTAGGAATAACGAGACATTATTTTGCATCGAC
TACAACAAGCCTAACTTTTACTTTCCTTTCGAGGCGCTACCTTAAGTCTC
TTTTTTTCTTAGATACAAAAGTTTGCCGACAAATTGCAAAAACATCGAGG
CAACCTATGCCAAGCTAGAAGTCAAACGAGAAATACTGGCAGTCGCTGAA
GCGTTTGAAAAACGAGTAACATATAAGGTGGACAGAATCAATGGTATCGT
ATCCAGTGTTGAAGCTGCAAAGAAATTTCTATTCTCGGCTGACTGTCCAC
TCGTTTTTATCGGTATAACTTCATTGACAAATGTTAGGATAGCAGACGAT
GCCATTCGAGAGGCAATGACGTTGCTTGGACGTGGAGATGTCGATGTCTA
TCAGCTTTTTAGATCGTGTTATTTAAAGAAAAACAACGAATTACTTAAGG
ATGAATCGTTTGTTTTTTTAAATTCTGGATATGTTGGAAAAATATCAGAG
TTTATTTATGTCAAAAACAACAATGGTTCCTTCAAATTTGCTCGCGTTCA
ACTATTCTCTTTTCAACACTATATCAACCCGCAAGATATACCTACGCTTG
ACAATACTGGTCGTACAGCCATAGTCAAAATGGAATCTGTTATGCGAAAG
GTCATTGCCTACTGTAGGAATAACGAGACATTATTTTGCATCGACTACAA
CAAGCCTAACTTTTACTTTCCTTTCGAGGCGCTACCTTAAGTCTCTTTTT
TTCTTAGATACAAAAGTTTGCCGACAAATTGCAAAAACATCGAGGCAACC
TATGCCAAGCTAGAAGTCAAACGAGAAATACTGGCAGTCGCTGAAGCGTT
TGAAAAACGAGTAACATATAAGGTGGACAGAATCAATGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038902-exon-sc0001961-1575043694:33810..33960 | TCONS_00038902-exon-sc0001961-1575043694:33810..33960 | Clytia hemisphaerica | exon |
| TCONS_00038902-exon-sc0001961-1575043694:32932..33456 | TCONS_00038902-exon-sc0001961-1575043694:32932..33456 | Clytia hemisphaerica | exon |
| TCONS_00038902-exon-sc0001961-1510915933:33810..33960 | TCONS_00038902-exon-sc0001961-1510915933:33810..33960 | Clytia hemisphaerica | exon |
| TCONS_00038902-exon-sc0001961-1510915933:32932..33456 | TCONS_00038902-exon-sc0001961-1510915933:32932..33456 | Clytia hemisphaerica | exon |
| TCONS_00038902-exon-sc0001961-1491911889:33810..33960 | TCONS_00038902-exon-sc0001961-1491911889:33810..33960 | Clytia hemisphaerica | exon |
| TCONS_00038902-exon-sc0001961-1491911889:32932..33456 | TCONS_00038902-exon-sc0001961-1491911889:32932..33456 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001961 | supercontig | sc0001961:32932..33960 - |
Blast
The following BLAST results are available for this feature:
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