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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038901 ID=TCONS_00038901|Name=TCONS_00038901|organism=Clytia hemisphaerica|type=transcript|length=939bp
gagaaaaagaaaatgaacctTCTTTCTGGGGAAAATATATTTATTGTCCA
ATAAATTACACTGGAGGAAGACTGGGATAACTCTTTGTGGCATTTAAAAA
AAGCCCTGTTAAATGAAGCTCCATTAGACACAGTGACAATTACTCTTAAC
TTGCAAGTCAGCTCTAGTACGGAGACAGCTCTCCAAAAAAGTAACATCAA
TTGAGAGCCCGTGGCACCAACAGTGAGAAAGTAAGCGAAGCTGAACTTAA
GATCTGTTGATATACCACGCACATAAAAGACAAGACAATGAGTTGCAACA
GTATCTGATTCTTTAAAAGTAGAGTAGTTAATATCAGGGTCCCCAAGATC
AACAAAACCGATAAGTTCCCCAGTGTGCTTATCAAAAACAAGGTCTTCTT
GGACTTTCACTTCATCAAAAGACAATGTGATGTTCTTTTGGTGGCCTTca
aaatcttttgtcaaatcTACCAGTTCTTGAACAACTTCACGATTGAACCC
AACGGTTGGTCGAATGGCATTTTTGTAGTCACGGAGAGTTCTTCTACTTG
GCAAGACTAAAACTTTGGAATCTCGCAGCTCATCATAAGCCTTGGCTGAC
TTTGAAGCTAAAGACAGACAAAAGCGTATCATCATGGGATGGTAAACATA
GTTTCCCTGAGAAGACAGTTTTTTCTGCTCGCGCCAAAAAAGCTTCATGA
AAGGCGAAGAATCTTCACTTTGGTTTTTCATAATGGCATTGATATCAGCA
GCCATACCAGACGAAACAGCAATACCTTTAGACTCCATTTCATTTTTGAG
GTGTTCAATATCAATCGTTAGTTTCTTTGTTAGGGCTCTTTCTTGTTTCA
GGGCTAAGATGACTTTCTGCGGGTTCGTCTTTGATAGTGGTGCAAACTTT
GAAGCTGGAGTgaggttacttttgtcttttaCATCTTTC Run BLAST on NCBI transcript from alignment at sc0001961:24477..25493+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038901 ID=TCONS_00038901|Name=TCONS_00038901|organism=Clytia hemisphaerica|type=transcript|length=1017bp|location=Sequence derived from alignment at sc0001961:24477..25493+ (Clytia hemisphaerica)
gagaaaaagaaaatgaacctTCTTTCTGGGGAAAATATATTTATTGTCCA
ATAAATTACACTGGAGGAAGACTGGGATAACTCTTTGTGGCATTTAAAAA
AAGCCCTGTTAAATGAAGCTCCATTAGACACAGTGACAATTACTCTTAAC
TTGCAAGTCAGCTCTAGTACGGAGACAGCTCTCCAAAAAAGTAACATCAA
TTGAGAGCCCGTGGCACCAACAGTGAGAAAGTAAGCGAAGCTGAACTTAA
GATCTGTTGATATACCACGCACATAAAAGACAAGACAATGAGTTGCAACA
GTATCTGATTCTTTAAAAGTAGAGTAGTTAATATCAGGGTCCCCAAGATC
AACAAAACCGATAAGTTCCCCAGTGTGCTTATCAAAAACAAGGTCTTCTT
GGACTTTCACTTCATCAAAAGACAATGTGATGTTCTTTTGGTGGCCTTca
aaatcttttgtcaaatcTACCAGTTCTTGAACAACTTCACGATTGAACCC
AACGGTTGGTCGAATGGCATTTTTGTAGTCACGGAGAGTTCTTCTACTTG
GCAAGACTAAAACTTTGGAATCTCGCAGCTCATCATAAGCCTTGGCTGAC
TTTGAAGCTAAAGACAGACAAAAGCGTATCATCATGGGATGGTAAACATA
GTTTCCCTGAGAAGACAGTTTTTTCTGCTCGCGCCAAAAAAGCTTCATGA
AAGGCGAANNNNNNNNNNNNTAAACATAGTTTCCCTGAGAAGACAGTTTT
TTCTGCTCGCGCCAAAAAAGCTTCATGAAAGGCGAAGAATCTTCACTTTG
GTTTTTCATAATGGCATTGATATCAGCAGCCATACCAGACGAAACAGCAA
TACCTTTAGACTCCATTTCATTTTTGAGGTGTTCAATATCAATCGTTAGT
TTCTTTGTTAGGGCTCTTTCTTGTTTCAGGGCTAAGATGACTTTCTGCGG
GTTCGTCTTTGATAGTGGTGCAAACTTTGAAGCTGGAGTgaggttacttt
tgtcttttaCATCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038901-exon-sc0001961-1491911889:24477..25123 | TCONS_00038901-exon-sc0001961-1491911889:24477..25123 | Clytia hemisphaerica | exon |
| TCONS_00038901-exon-sc0001961-1510915933:24477..25123 | TCONS_00038901-exon-sc0001961-1510915933:24477..25123 | Clytia hemisphaerica | exon |
| TCONS_00038901-exon-sc0001961-1575043694:24477..25123 | TCONS_00038901-exon-sc0001961-1575043694:24477..25123 | Clytia hemisphaerica | exon |
| TCONS_00038901-exon-sc0001961-1491911889:25202..25493 | TCONS_00038901-exon-sc0001961-1491911889:25202..25493 | Clytia hemisphaerica | exon |
| TCONS_00038901-exon-sc0001961-1510915933:25202..25493 | TCONS_00038901-exon-sc0001961-1510915933:25202..25493 | Clytia hemisphaerica | exon |
| TCONS_00038901-exon-sc0001961-1575043694:25202..25493 | TCONS_00038901-exon-sc0001961-1575043694:25202..25493 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001961 | supercontig | sc0001961:24477..25493 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021896 | Transposase_37 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004803 | transposase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006313 | transposition, DNA-mediated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0004803 |
transposase activity |
Blast
The following BLAST results are available for this feature:
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