TCONS_00038899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038899
Unique NameTCONS_00038899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length225

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038899 ID=TCONS_00038899|Name=TCONS_00038899|organism=Clytia hemisphaerica|type=transcript|length=225bp
GCATATCAGGGATTGTTCGGATGTGGTATGTGAGTTTGTGCTTGAAGCCA
GCGATGAAAGCTACGTAGGCGGATTGCGGTTCGGACTTGGCAATATCACA
CAATACTTTTAGCTGAGAGCACCACTGTTGGACAAGCCCATTCACGTATT
CATCTTTTCCTTCTGCTCTTCCAATGAAGCCACCAAGGTATTTTCGTCCA
GAGGTTGTCAGTTTGATGTCGGTAC
Run BLAST on NCBI

transcript from alignment at sc0001960:5932..6156

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038899 ID=TCONS_00038899|Name=TCONS_00038899|organism=Clytia hemisphaerica|type=transcript|length=225bp|location=Sequence derived from alignment at sc0001960:5932..6156 (Clytia hemisphaerica)
GTACCGACATCAAACTGACAACCTCTGGACGAAAATACCTTGGTGGCTTC
ATTGGAAGAGCAGAAGGAAAAGATGAATACGTGAATGGGCTTGTCCAACA
GTGGTGCTCTCAGCTAAAAGTATTGTGTGATATTGCCAAGTCCGAACCGC
AATCCGCCTACGTAGCTTTCATCGCTGGCTTCAAGCACAAACTCACATAC
CACATCCGAACAATCCCTGATATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023372XLOC_023372Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038899-exon-sc0001960-1491911889:5932..6156TCONS_00038899-exon-sc0001960-1491911889:5932..6156Clytia hemisphaericaexon
TCONS_00038899-exon-sc0001960-1510915933:5932..6156TCONS_00038899-exon-sc0001960-1510915933:5932..6156Clytia hemisphaericaexon
TCONS_00038899-exon-sc0001960-1575043694:5932..6156TCONS_00038899-exon-sc0001960-1575043694:5932..6156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001960supercontigsc0001960:5932..6156 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.23332	3.81902	7.37718	1.57902	36.4024	34.2771	52.936	54.4193	15.4029	22.5448	9.92202	15.57	14.1024	18.463	16.3588	20.6374	18.2627	11.2492	12.6203	3.81677	3.6962	6.62203	1.86424	0	32.3959	28.4943	3.40634	0	2.8099	0.983794
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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