TCONS_00038891 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038891
Unique NameTCONS_00038891
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038891 ID=TCONS_00038891|Name=TCONS_00038891|organism=Clytia hemisphaerica|type=transcript|length=2462bp
ttcccatctatcttttagattttcaaaaaactggaAATTACAATGGTAAG
CCTACAGCTTCAACTAGAAACTAAACTTTGGATAGCTGATCTTCATGACC
TTGACCAAGCTGCTAATGGGAGAAAGTTGACATGTTTGCGCACATATGGG
GaaacattgaatatcaaacaaCATGCTGTTTTTGCCAATTCTTATCGAAA
GTGCTCACCAATGATCACTGTTGAAATGTCTACACAGGGTTATATTCCAT
CAGTAAAAGATTTGGTCCATGTCTTGAATATAAGGTCCTGTTTTAAAACA
GATCATACTATTTTAGCTGGGAGTTATTGggaaaatgaaatcaaagacAC
AAATGTAATCCAATTTTatgagaaatatcttttggatgATCCTGCTGTGC
TGGATCATTGTAAGTCTCGTAACAAAGGACAAAATAACAATCTTTGTAAA
GAGACCTGGTCATGGAAACAATCTTTCAGTAACTTCCCTTTTCTCTTGCT
CACAACTGAAGAACCACAACCTCGTCAATTATCTTTATCCAATCGTAATG
AAGTTGATTGTATTATTTATTGGGACGTCAATCAGAGTGACCGCTCTATT
GGAAAAGCACTTTTTCTGCCTTATGAAATACCTGATATGGTTGGTGAGGC
AGGCATTGCAGTGTTTCGAAACACTTCTGATAGATTACTTGGTATCTATA
TGTGTGAACAGCTCCGAGACAGAATGATGGATGAGAACCGTGTTCTGTAT
AGAGAAGCTCAGGAAACATCAGTTCAAAGTATGCTTTTCAagaggaaaat
caaatatggtatCGATCCAGCACCACCAGATATTTTGTCTGAAAAGGAAG
TTGCTGAACTACTCTCTATAATGGTGGTGGAGATTTACCAGATGATTGGG
AAGATGATTTCGTACCATCACCAGATTACGATTCTGAAGAATCAGAATCG
GAATCCTCAGTATCTGAAGATCCTCTTTCTGATAACTACATTGAAGATGA
TGAAATATGCTCTGAAAATGATGCAACAGAGTCTGACGATAGTTTTGAAC
AACATGATAGAACATTTTTCTCATTTGATGGAAAGACACCTAAGATTTTA
TATTACGCAAAATCAGGAGCTCTTTCTGTCGTCAAAAGGGAAGCTCTGTG
TGAAAGAGCTTACATTATTAATGTTTTAATAAAGCGAACTGAAAAAAAAG
GAGCTGAACTTTTACAATGGCATGATGACACACCTCTCATTGCTGCGGCA
AGAAATGGTCATTTTGAAATTGTGCATCATTTGTTATCTATCGGAGCAGA
CCCTACCTTGGAGAGTAGCCATGCTAGTGGTACCGGTGGAAATGCAATCA
AAGCTGCGTCAGAAAATTTATCTTGCCTACgtaaaaacaaagatgaaatt
ttaaagaaatgttTTGCAGGTGATATTGAGACAATTGACCCTAAAGCAGT
TTCATTAGATATTCTTTACAGAATAAAAGATTTCCAGGATATCATTGATG
TGTTGAAAATTGCTGAGTCACATTGGCAAAAGGCACCATACTTCTCTGCA
AGATTCTCCAATGAACGCCAAAGGCAACTTAGAAGATCTCCAAACAAACC
ACTTGACCAAGAAAAGCTAAAAGAAATGTTAGATGAGTTCAAGTCAAGAC
CTCTTATTATGGATGAATTTGATGATCTGGTTGCATCGATTGTTGAAGTT
AAGaagaaccaaaagaaagttctTCAAGAACAACAAAAAACTTCTGATTG
CAGTGACTTGAACCAGCGTATAAGAGATGGTATCTGTGCAAGCAGTGCCA
GATGTTCGGGTTCTTCAGCTGCAAAAGGTTGTCAACTGAAGTGTTGTGGT
AAATGCTGCCCAGGCCCTTGTAAAAGGCATCACTTAAAGTCTACAagtat
gaattattttttatttcttgttttAATGCAAATTTCCTAAGTTCCTAAAT
AAGGTCTGACCAGCTTGAGAGAATGATAAATCCTGCAAATCTCAAAGGTT
CCTGTTAAGAAAAAAAGGTCTGCTCAATAAAGCTTCATAGTTTATTTTGa
aggaaaggattttgggagagCTGGGAAACCATGCTAATTTTCTTCATAAA
GGGACATGTTCATTAAAAAATGCAAGCTCTGTGAcatatcaaaaaatcaa
aaaaatcgtATTGTACTTAAGTCAACAAAATTTGCTGGATAATTAGGTAA
CATGGTTACAAAGCCCCTGAAAAGGCCAAATTTCACTTTCTCTGGTTAGT
TGAACGAGAATGGATAAAAATGTAACTTTTCAATACAGTTCGAGctggaa
aaacactttttgataaatgcatAACAAATGAATAAAAGTATCAAAGTTTA
ACTACCACCTGTTGTTATTCGGACGGGTTTTAGCTTATGGGAACGAAGAT
ATTGGATAATGAAGTAACTTAGTCAGAAAATCGTAATCTTTCAATAACTT
CAATGATATAGA
Run BLAST on NCBI

transcript from alignment at sc0001958:8096..11749-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038891 ID=TCONS_00038891|Name=TCONS_00038891|organism=Clytia hemisphaerica|type=transcript|length=3654bp|location=Sequence derived from alignment at sc0001958:8096..11749- (Clytia hemisphaerica)
TTCCCATCTATCTTTTAGATTTTCAAAAAACTGGAAATTACAATGGTAAG
CCTACAGCTTCAACTAGAAACTAAACTTTGGATAGCTGATCTTCATGACC
TTGACCAAGCTGCTAATGGGAGAAAGTTGACATGTTTGCGCACATATGGG
GAAACATTGAATATCAAACAACATGCTGTTTTTGCCAATTCTTATCGAAA
GTGCTCACCAATGATCACTGTTGAAATGTCTACACAGGGTTATATTCCAT
CAGTAAAAGATTTGGTCCATGTCTTGAATATAAGGTCCTGTTTTAAAACA
GATCATACTATTTTAGCTGGGAGTTATTGGGAAAATGAAATCAAAGACAC
AAATGTAATCCAATTTTATGAGAAATATCTTTTGGATGATCCTGCTGTGC
TGGATCATTGTAAGTCTCGTAACAAAGGACAAAATAACAATCTTTGTAAA
GAGACCTGGTCATGGAAACAATCTTTCAGTAACTTCCCTTTTCTCTTGCT
CACAACTGAAGAACCACAACCTCGTCAATTATCTTTATCCAATCGTAATG
AAGTTGATTGTATTATTTATTGGGACGTCAATCAGAGTGACCGCTCTATT
GGAAAAGCACTTTTTCTGCCTTATGAAATACCTGATATGGTTGGTGAGGC
AGGCATTGCAGTGTTTCGAAACACTTCTGATAGATTACTTGGTATCTATA
TGTGTGAACAGCTCCGAGACAGAATGATGGATGAGAACCGTGTTCTGTAT
AGAGAAGCTCAGGAAACATCAGTTCAAAGTATGCTTTTCAAGAGGAAAAT
CAAATATGGTATCGATCCAGCACCACCAGATATTTTGTCTGAAAAGGAAG
TTGCTGAACTACTCTCTATAATGGGTAAGTTTAAAAATAAAATCAATATG
GTTCTTCTAAAATCTTTCGAAATATTTACTTCTAGGTAGCAACGAAGAAC
TTGCTACTAATTGGCTTTTTTAATTATCTCAAGCTTTGGATTTCAAAAAA
GTTAAATTGGAAAGAAGATTCTGAGAAAATTAGAACTGTTATCATAGTAA
ACTTTTCTGTGGCGGAATAAGATAGGTAATTTCAAATTTTAAACTTTACT
ACTAAATTTTCTTCATCCTTTTCAAAGTTATGAAGAAAATGTTCAAATAT
TCGTTTTTGAGAAAAAAGATAATAATCAATTGTTATCTTACNTATCTTTT
GGATGATCCTGCTGTGCTGGATCATTGTAAGTCTCGTAACAAAGGACAAA
ATAACAATCTTTGTAAAGAGACCTGGTCATGGAAGCAATCTTTCAGTAAC
TTCCCTTTTCTCTTGTTCACATCTGAAGAACCACAACCTCGTCAATTATC
TTTATCCAATCGTAATGAAGTTGATTGTATTATTTATTGGGACGTCAATC
AGAGTGGTCGCTCTATTGGAAAAGCACTTTTTCTGCCTTATGAAATACCT
GATATGGTTGGTGAGGTAGGCATTGCAGTGTTTCGAAACACTTCTGATAG
ATTACTTGGTATCTATATGTGTGAACAGCTCCGAGACAGAATGATGGATG
AGAACTGTGTTCTGTATAGAGAAGCTCAGGAAACATCAGTTCAAAGTATG
CTTTTCAAGAGGAAAATCAAATATGGTATCGATCCAGCACCACCAGATAT
TTTGTCTGAAAAGGAAGTTGCTGAACTACTCTCTATAATGGGTAAGTTTA
AAAATAAAATCAATATGGTTCTTCTAAAATCTTTCGAAATATTTACTTCT
AGGTAGCAACGAAGAACTTGCTACTAATTGGCTTTTTTAATTATCTCAAG
CTTTGGATTTCAAAAAAGTTAAATTGGAAAGAAGATTCTGAGAAAATTAG
AACTGTTATCATAGTAAACTTTTCTGTGGCGGAATAAGATAGGTAATTTC
AAATTTTAAACTTTACTACTAAATTTTCTTCATCCTTTTCAAAGTTATGA
AGAAAATGTTCAAATATTCGTTTTTGAGAAAAAAGATAATAATCCATTGT
TATCTTACTTAAAATACAAGAAATTGTAAAAAGTTGTTTAACAATACTTT
AATATTTTTCAGATAGTGGTGGAGATTTACCAGATGATTGGGAAGATGAT
TTCGTACCATCACCAGATTACGATTCTGAAGAATCAGAATCGGAATCCTC
AGTATCTGAAGATCCTCTTTCTGATAACTACATTGAAGATGATGAAATAT
GCTCTGAAAATGATGCAACAGAGTCTGACGATAGTTTTGAACAACATGAT
AGAACATTTTTCTCATTTGATGGAAAGACACCTAAGATTTTATATTACGC
AAAATCAGGAGCTCTTTCTGTCGTCAAAAGGGAAGCTCTGTGTGAAAGAG
CTTACATTATTAATGTTTTAATAAAGCGAACTGAAAAAAAAGGAGCTGAA
CTTTTACAATGGCATGATGACACACCTCTCATTGCTGCGGCAAGAAATGG
TCATTTTGAAATTGTGCATCATTTGTTATCTATCGGAGCAGACCCTACCT
TGGAGAGTAGCCATGCTAGTGGTACCGGTGGAAATGCAATCAAAGCTGCG
TCAGAAAATTTATCTTGCCTACGTAAAAACAAAGATGAAATTTTAAAGAA
ATGTTTTGCAGGTGATATTGAGACAATTGACCCTAAAGCAGTTTCATTAG
ATATTCTTTACAGAATAAAAGATTTCCAGGATATCATTGATGTGTTGAAA
ATTGCTGAGTCACATTGGCAAAAGGCACCATACTTCTCTGCAAGATTCTC
CAATGAACGCCAAAGGCAACTTAGAAGATCTCCAAACAAACCACTTGACC
AAGAAAAGCTAAAAGAAATGTTAGATGAGTTCAAGTCAAGACCTCTTATT
ATGGATGAATTTGATGATCTGGTTGCATCGATTGTTGAAGTTAAGAAGAA
CCAAAAGAAAGTTCTTCAAGAACAACAAAAAACTTCTGATTGCAGTGACT
TGAACCAGCGTATAAGAGATGGTATCTGTGCAAGCAGTGCCAGATGTTCG
GGTTCTTCAGCTGCAAAAGGTTGTCAACTGAAGTGTTGTGGTAAATGCTG
CCCAGGCCCTTGTAAAAGGCATCACTTAAAGTCTACAAGTATGAATTATT
TTTTATTTCTTGTTTTAATGCAAATTTCCTAAGTTCCTAAATAAGGTCTG
ACCAGCTTGAGAGAATGATAAATCCTGCAAATCTCAAAGGTTCCTGTTAA
GAAAAAAAGGTCTGCTCAATAAAGCTTCATAGTTTATTTTGAAGGAAAGG
ATTTTGGGAGAGCTGGGAAACCATGCTAATTTTCTTCATAAAGGGACATG
TTCATTAAAAAATGCAAGCTCTGTGACATATCAAAAAATCAAAAAAATCG
TATTGTACTTAAGTCAACAAAATTTGCTGGATAATTAGGTAACATGGTTA
CAAAGCCCCTGAAAAGGCCAAATTTCACTTTCTCTGGTTAGTTGAACGAG
AATGGATAAAAATGTAACTTTTCAATACAGTTCGAGCTGGAAAAACACTT
TTTGATAAATGCATAACAAATGAATAAAAGTATCAAAGTTTAACTACCAC
CTGTTGTTATTCGGACGGGTTTTAGCTTATGGGAACGAAGATATTGGATA
ATGAAGTAACTTAGTCAGAAAATCGTAATCTTTCAATAACTTCAATGATA
TAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023365XLOC_023365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038891-exon-sc0001958-1575043694:10876..11749TCONS_00038891-exon-sc0001958-1575043694:10876..11749Clytia hemisphaericaexon
TCONS_00038891-exon-sc0001958-1575043694:8096..9683TCONS_00038891-exon-sc0001958-1575043694:8096..9683Clytia hemisphaericaexon
TCONS_00038891-exon-sc0001958-1510915933:10876..11749TCONS_00038891-exon-sc0001958-1510915933:10876..11749Clytia hemisphaericaexon
TCONS_00038891-exon-sc0001958-1510915933:8096..9683TCONS_00038891-exon-sc0001958-1510915933:8096..9683Clytia hemisphaericaexon
TCONS_00038891-exon-sc0001958-1491911889:10876..11749TCONS_00038891-exon-sc0001958-1491911889:10876..11749Clytia hemisphaericaexon
TCONS_00038891-exon-sc0001958-1491911889:8096..9683TCONS_00038891-exon-sc0001958-1491911889:8096..9683Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001958supercontigsc0001958:8096..11749 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.37707	4.00654	6.11371	6.00613	1.02008	0	2.71479e-10	0	0	0	1.1647	0	0	0.429054	0.712616	0.811117	0.908555	0.000148804	0.298833	0.234591	0.815483	0.594592	3.85587	3.91925	0.632745	0	0.379642	0.565697	1.99477	2.9117
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038891 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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