TCONS_00038885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038885
Unique NameTCONS_00038885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038885 ID=TCONS_00038885|Name=TCONS_00038885|organism=Clytia hemisphaerica|type=transcript|length=425bp
CAAGAACTCCACAGCTATGAGCGTCTGACTGAGACGGAATTTCCCAAGGT
TGATAAAACGTCCAGCTGAAACTTGTAAATGCTTTGCCAATTCTCGAATA
TGCCCGTCTTAGTAGATGAATGATTGGATGAAAAACCGATGAATCGTTCT
CTTTGATTGAGCTGAGATGGAATATCGACTTTGCCTTTGGGTATAAAGCA
ATGATAGACCAGTGACCAGGATTACCAGTTTTGTTGAGGGGGAAAATAAT
TAGATTACAATCAAGGAAATCACGATGTTCAAATTTTTGGTACTCGTTCG
AGTGGACTCCATCGATAACAGATTCGATGAGAAACGAACAGACTATTACA
TTTGGGTCGTCTTGTCTTGGGATGGTTCTGAGGAAAGCTGAAATAACATC
ACAATTGAGAAGGTTATCACAAGAA
Run BLAST on NCBI

protein sequence of TCONS_00038885-protein

>TCONS_00038885-protein ID=TCONS_00038885-protein|Name=TCONS_00038885-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
SCDNLLNCDVISAFLRTIPRQDDPNVIVCSFLIESVIDGVHSNEYQKFEH
RDFLDCNLIIFPLNKTGNPGHWSIIALYPKAKSIFHLSSIKENDSSVFHP
IIHLLRRAYSRIGKAFTSFSWTFYQPWEIPSQSDAHSCGVL
Run BLAST on NCBI

transcript from alignment at sc0001956:20850..21274

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038885 ID=TCONS_00038885|Name=TCONS_00038885|organism=Clytia hemisphaerica|type=transcript|length=425bp|location=Sequence derived from alignment at sc0001956:20850..21274 (Clytia hemisphaerica)
TTCTTGTGATAACCTTCTCAATTGTGATGTTATTTCAGCTTTCCTCAGAA
CCATCCCAAGACAAGACGACCCAAATGTAATAGTCTGTTCGTTTCTCATC
GAATCTGTTATCGATGGAGTCCACTCGAACGAGTACCAAAAATTTGAACA
TCGTGATTTCCTTGATTGTAATCTAATTATTTTCCCCCTCAACAAAACTG
GTAATCCTGGTCACTGGTCTATCATTGCTTTATACCCAAAGGCAAAGTCG
ATATTCCATCTCAGCTCAATCAAAGAGAACGATTCATCGGTTTTTCATCC
AATCATTCATCTACTAAGACGGGCATATTCGAGAATTGGCAAAGCATTTA
CAAGTTTCAGCTGGACGTTTTATCAACCTTGGGAAATTCCGTCTCAGTCA
GACGCTCATAGCTGTGGAGTTCTTG

Coding sequence (CDS) from alignment at sc0001956:20850..21274

>TCONS_00038885 ID=TCONS_00038885|Name=TCONS_00038885|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0001956:20850..21274 (Clytia hemisphaerica)
TCTTGTGATAACCTTCTCAATTGTGATGTTATTTCAGCTTTCCTCAGAAC
CATCCCAAGACAAGACGACCCAAATGTAATAGTCTGTTCGTTTCTCATCG
AATCTGTTATCGATGGAGTCCACTCGAACGAGTACCAAAAATTTGAACAT
CGTGATTTCCTTGATTGTAATCTAATTATTTTCCCCCTCAACAAAACTGG
TAATCCTGGTCACTGGTCTATCATTGCTTTATACCCAAAGGCAAAGTCGA
TATTCCATCTCAGCTCAATCAAAGAGAACGATTCATCGGTTTTTCATCCA
ATCATTCATCTACTAAGACGGGCATATTCGAGAATTGGCAAAGCATTTAC
AAGTTTCAGCTGGACGTTTTATCAACCTTGGGAAATTCCGTCTCAGTCAG
ACGCTCATAGCTGTGGAGTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023359XLOC_023359Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038885-proteinTCONS_00038885-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038885-exon-sc0001956-1491911889:20850..21274TCONS_00038885-exon-sc0001956-1491911889:20850..21274Clytia hemisphaericaexon
TCONS_00038885-exon-sc0001956-1510915933:20850..21274TCONS_00038885-exon-sc0001956-1510915933:20850..21274Clytia hemisphaericaexon
TCONS_00038885-exon-sc0001956-1575043694:20850..21274TCONS_00038885-exon-sc0001956-1575043694:20850..21274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001956supercontigsc0001956:20850..21274 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43785	0.806399	0.554883	0.337085	0.509867	0	0	1.03601	0.528671	0.335597	0	1.31673	0.389429	0.368057	1.50892	1.89029	2.30951	1.676	1.09095	1.0088	1.72242	1.62141	0.0889876	0.180307	0	0	1.013	0.349816	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003653Peptidase_C48_C
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008234 cysteine-type peptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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