TCONS_00038875 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00038875
Unique Name	TCONS_00038875
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	696

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0001953:7599..10320+
coding sequence from alignment at sc0001953:7599..10320+

transcript sequence

>TCONS_00038875 ID=TCONS_00038875|Name=TCONS_00038875|organism=Clytia hemisphaerica|type=transcript|length=696bp
GTTTGGTATGACCGCCGTTTGAATTACACGCGGTCGCTCGCTGTGATGTC
AATGGTGGGTTACGTTCTTGGATTGGGTGACAGACATCCTTCGAATTTGA
TGTTGGATCGAATGTCCGGAAAGATTTTACATATCGATTTCGGTGATTGT
TTCGaaGTTGCAATGACGAGAGAAAAGTTTCCCGAGAAAATCCCATTCCG
TTTGACCAGAATGCTGACGAACGCTATGGAGGTGACGGGTATTGACGGCA
ACTACCGTATGACGTGTGAAAGTGTCATGCGTGTTTTACGTGAAAACAAA
GACAGTTTGATGGCCGTTCTCGAAGCTTTCGTTTACGATCCTTTATTGAA
CTGGCGCTTGATTGATAcggAGAAACGATCAAAAGGAAGACAAGAATCTT
ATTCAACGCACAATGAAGGTCACGAATTCCAAGATAACGTGGATCGAACG
CACGACCGTCCACGTGGTAAAAAGGTCACCAATCCGGAACACCCGACACA
AGATCCGGAACACAGTAATAATAAACCGGAAGCCGTCAATAAGAGAGCGT
TACAAATCGTGAACCGTGTCCGTGACAAATTGACGGGGCGCGATTTCAAC
AAAGACGAAGCGATAGATGTTGACACACAAGTTGATTTATTGATTCAACA
AGCCACTTCACATGCTAACCTCTGTCAAGCTTATATTGGATGGTAA

Run BLAST on NCBI

protein sequence of TCONS_00038875-protein

>TCONS_00038875-protein ID=TCONS_00038875-protein|Name=TCONS_00038875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
VWYDRRLNYTRSLAVMSMVGYVLGLGDRHPSNLMLDRMSGKILHIDFGDC
FEVAMTREKFPEKIPFRLTRMLTNAMEVTGIDGNYRMTCESVMRVLRENK
DSLMAVLEAFVYDPLLNWRLIDTEKRSKGRQESYSTHNEGHEFQDNVDRT
HDRPRGKKVTNPEHPTQDPEHSNNKPEAVNKRALQIVNRVRDKLTGRDFN
KDEAIDVDTQVDLLIQQATSHANLCQAYIGW

Run BLAST on NCBI

transcript from alignment at sc0001953:7599..10320+

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00038875 ID=TCONS_00038875|Name=TCONS_00038875|organism=Clytia hemisphaerica|type=transcript|length=2722bp|location=Sequence derived from alignment at sc0001953:7599..10320+ (Clytia hemisphaerica)
GTTTGGTATGACCGCCGTTTGAATTACACGCGGTCGCTCGCTGTGATGTC
AATGGTGGGTTACGTTCTTGGATTGGGTGACAGGTAAGCaacacaatttt
ataaatagAGTCTTCATAATTCGAACCTatataattcgaatgtctcctta
actcgaacaagttttctggtcccttcagttaacaatgacTTATAAAATAC
TCCATATCTAAAAATTTCCTCAACTTTTTTGTACgatagagtctctttaa
ctcgaacgacgttttctggtcccttcagttaacaatgacTTATAAATTAC
TCCATATCTCGAAATTTCctcaactcgaacaaatttgagttcctcgtgcg
tgttcgagtaATATGCGTTTCCCAAAGAAAATCAGGGATGTACCGTATTC
CTCTTACAGTCTAGGAGGAGTTGGGATCCCGAACGTTAACCCCTGACGCC
TCATACATCATAACCATCACTCCTATCTTAcacttcttttgttttcatca
gACATCCTTCGAATTTGATGTTGGATCGAATGTCCGGAAAGATTTTACAT
ATCGATTTCGGTGATTGTTTCGaagtgagaatttttttttcaaatatact
tTTATATTGTATTTCTTCGTTAAAAGTATtgttaaaagtatttttatgtC
GTTTACTTTAAAATGTCTCATATGAGCGAgcttatgtatttgcacttttg
aagacagtaaagtgactgaagcgatttggaacaacccgcacttttgaccc
gcaaaatggAGGACGATAAAAGTGCTCATTTATTGTCGTCTTCAGTAAGA
CAAATAAACTCCGTCtctacataaactcggtattataTCCTGAGAAAGAA
TCTTTGTGTCAATTTATTACTTAATTTTACGATCTTTTTTGGACCcacct
ggaggtcctatgaattaacctttgtccgtccgttcgtccgtctgttacca
gcttttcttgagattggctcattagttttttctgattttcatctttagtt
ttttccaatttttttgcaaaaagatgcgtatttgcaatgctcaaattttt
tttccggttgaaaatgccacaaatcgccgtttttgcagattttcattaga
ttttttccttgtatttctatgtttttgacacaaaaacattattgataaca
atgctcaccatcaagcatgattcaattgtcaataaaactgatttttgcga
ccaaaactttctatttatttttccctacaacccttccctctccccttatc
aacaatcaatgatgaattatgcattttcgctaaacgctatattttctgac
tgatttttttctcctcgcattgctatctaactttcatcatcaggtaggtc
cattcagcatctAGCTTGTTTAATCTTCACTTTCACCATTTTTAGGTTGC
AATGACGAGAGAAAAGTTTCCCGAGAAAATCCCATTCCGTTTGACCAGAA
TGCTGACGAACGCTATGGAGGTTTGTTTGTTTAACTCCATACGGGATATT
ACATAGTTAGCCATACAGCAGCAATATCTTGGTAAACTTTAAAGACTAAA
ATGGCGAATTGCAGCAATACATTATTTATGCATCCTTCAAAGCTTGTAAT
GTTGGGAATGGCTTGAAATCCTTGTCCTTTATAAGCTATCGCAGCTAAAG
ATAAAGCTATTGTTTTGAGACTTAACTCTGAGCCAAGACATTTTATAAAT
AAGTGTTATTTCTAGATAAAAGaattgaaagtgaaaaattgatgtctTTC
AGGTGACGGGTATTGACGGCAACTACCGTATGACGTGTGAAAGTGTCATG
CGTGTTTTACGTGAAAACAAAGACAGTTTGATGGCCGTTCTCGAAGCTTT
CGTTTACGATCCTTTATTGAACTGGCGCTTGATTGATAGTAAGTTGTTTT
TGTTACCACTTGTATAGCTCTCGctaattttaattcaaattacCTTTCCC
ATTTTATTACCTTTGGGAATCGAACATCTATCGAATGAACAAAGGATTCT
GTTTCAAGTAAGATAACTAGTCTTGGGGATTTTTCTTTATACAATAGGTA
TAAAGCAAAGTAAATAGGTCCCGCACTGCAAACAGTGTCAATGGTCACTA
TTaatgttttgttaattttttttcagcggAGAAACGATCAAAAGGAAGAC
AAGAATCTTATTCAACGCACAATGAAGGTCACGGTAAGAACTTTGGACAC
TTCTATAATGCTCCTTTTCTCTTAGAAAATTATGATTTAGAGAGAAAAGC
CGAACAACAGATTAAGAGTACTTAGAGTAGGCTTGTATTTCTTCCAAAAA
CGACTGGAATCCTACGAAATTGTATGAAATCAACCTAAACTAAAAAGCTA
ATGATGTCCTTTATACTTCCAGGCTAGTATgtacttttattaaaaaaatg
ctcGACAATATTTGAATTACTTGCATTTTGTTGTTACTTTAATTTCTTAG
AATTCCAAGATAACGTGGATCGAACGCACGACCGTCCACGTGGTAAAAAG
GTCACCAATCCGGAACACCCGACACAAGATCCGGAACACAGTAATAATAA
ACCGGAAGCCGTCAATAAGAGAGCGTTACAAATCGTGAACCGTGTCCGTG
ACAAATTGACGGGGCGCGATTTCAACAAAGACGAAGCGATAGATGTTGAC
ACACAAGTTGATTTATTGATTCAACAAGCCACTTCACATGCTAACCTCTG
TCAAGCTTATATTGGATGGTAA

Coding sequence (CDS) from alignment at sc0001953:7599..10320+

>TCONS_00038875 ID=TCONS_00038875|Name=TCONS_00038875|organism=Clytia hemisphaerica|type=CDS|length=4176bp|location=Sequence derived from alignment at sc0001953:7599..10320+ (Clytia hemisphaerica)
GTTTGGTATGACCGCCGTTTGAATTACACGCGGTCGCTCGCTGTGATGTC
AATGGTGGGTTACGTTCTTGGATTGGGTGACAGACATCCTTCGAATTTGA
TGTTGGATCGAATGTCCGGAAAGATTTTACATATCGATTTCGGTGATTGT
TTCGaaGTTGCAATGACGAGAGAAAAGTTTCCCGAGAAAATCCCATTCCG
TTTGACCAGAATGCTGACGAACGCTATGGAGGTGACGGGTATTGACGGCA
ACTACCGTATGACGTGTGAAAGTGTCATGCGTGTTTTACGTGAAAACAAA
GACAGTTTGATGGCCGTTCTCGAAGCTTTCGTTTACGATCCTTTATTGAA
CTGGCGCTTGATTGATAcggAGAAACGATCAAAAGGAAGACAAGAATCTT
ATTCAACGCACAATGAAGGTCACGAATTCCAAGATAACGTGGATCGAACG
CACGACCGTCCACGTGGTAAAAAGGTCACCAATCCGGAACACCCGACACA
AGATCCGGAACACAGTAATAATAAACCGGAAGCCGTCAATAAGAGAGCGT
TACAAATCGTGAACCGTGTCCGTGACAAATTGACGGGGCGCGATTTCAAC
AAAGACGAAGCGATAGATGTTGACACACAAGTTGATTTATTGATTCAACA
AGCCACTTCACATGCTAACCTCTGTCAAGCTTATATTGGATGGTAAGTTT
GGTATGACCGCCGTTTGAATTACACGCGGTCGCTCGCTGTGATGTCAATG
GTGGGTTACGTTCTTGGATTGGGTGACAGACATCCTTCGAATTTGATGTT
GGATCGAATGTCCGGAAAGATTTTACATATCGATTTCGGTGATTGTTTCG
aaGTTGCAATGACGAGAGAAAAGTTTCCCGAGAAAATCCCATTCCGTTTG
ACCAGAATGCTGACGAACGCTATGGAGGTGACGGGTATTGACGGCAACTA
CCGTATGACGTGTGAAAGTGTCATGCGTGTTTTACGTGAAAACAAAGACA
GTTTGATGGCCGTTCTCGAAGCTTTCGTTTACGATCCTTTATTGAACTGG
CGCTTGATTGATAcggAGAAACGATCAAAAGGAAGACAAGAATCTTATTC
AACGCACAATGAAGGTCACGAATTCCAAGATAACGTGGATCGAACGCACG
ACCGTCCACGTGGTAAAAAGGTCACCAATCCGGAACACCCGACACAAGAT
CCGGAACACAGTAATAATAAACCGGAAGCCGTCAATAAGAGAGCGTTACA
AATCGTGAACCGTGTCCGTGACAAATTGACGGGGCGCGATTTCAACAAAG
ACGAAGCGATAGATGTTGACACACAAGTTGATTTATTGATTCAACAAGCC
ACTTCACATGCTAACCTCTGTCAAGCTTATATTGGATGGTAAGTTTGGTA
TGACCGCCGTTTGAATTACACGCGGTCGCTCGCTGTGATGTCAATGGTGG
GTTACGTTCTTGGATTGGGTGACAGACATCCTTCGAATTTGATGTTGGAT
CGAATGTCCGGAAAGATTTTACATATCGATTTCGGTGATTGTTTCGaaGT
TGCAATGACGAGAGAAAAGTTTCCCGAGAAAATCCCATTCCGTTTGACCA
GAATGCTGACGAACGCTATGGAGGTGACGGGTATTGACGGCAACTACCGT
ATGACGTGTGAAAGTGTCATGCGTGTTTTACGTGAAAACAAAGACAGTTT
GATGGCCGTTCTCGAAGCTTTCGTTTACGATCCTTTATTGAACTGGCGCT
TGATTGATAcggAGAAACGATCAAAAGGAAGACAAGAATCTTATTCAACG
CACAATGAAGGTCACGAATTCCAAGATAACGTGGATCGAACGCACGACCG
TCCACGTGGTAAAAAGGTCACCAATCCGGAACACCCGACACAAGATCCGG
AACACAGTAATAATAAACCGGAAGCCGTCAATAAGAGAGCGTTACAAATC
GTGAACCGTGTCCGTGACAAATTGACGGGGCGCGATTTCAACAAAGACGA
AGCGATAGATGTTGACACACAAGTTGATTTATTGATTCAACAAGCCACTT
CACATGCTAACCTCTGTCAAGCTTATATTGGATGGTAAGTTTGGTATGAC
CGCCGTTTGAATTACACGCGGTCGCTCGCTGTGATGTCAATGGTGGGTTA
CGTTCTTGGATTGGGTGACAGACATCCTTCGAATTTGATGTTGGATCGAA
TGTCCGGAAAGATTTTACATATCGATTTCGGTGATTGTTTCGaaGTTGCA
ATGACGAGAGAAAAGTTTCCCGAGAAAATCCCATTCCGTTTGACCAGAAT
GCTGACGAACGCTATGGAGGTGACGGGTATTGACGGCAACTACCGTATGA
CGTGTGAAAGTGTCATGCGTGTTTTACGTGAAAACAAAGACAGTTTGATG
GCCGTTCTCGAAGCTTTCGTTTACGATCCTTTATTGAACTGGCGCTTGAT
TGATAcggAGAAACGATCAAAAGGAAGACAAGAATCTTATTCAACGCACA
ATGAAGGTCACGAATTCCAAGATAACGTGGATCGAACGCACGACCGTCCA
CGTGGTAAAAAGGTCACCAATCCGGAACACCCGACACAAGATCCGGAACA
CAGTAATAATAAACCGGAAGCCGTCAATAAGAGAGCGTTACAAATCGTGA
ACCGTGTCCGTGACAAATTGACGGGGCGCGATTTCAACAAAGACGAAGCG
ATAGATGTTGACACACAAGTTGATTTATTGATTCAACAAGCCACTTCACA
TGCTAACCTCTGTCAAGCTTATATTGGATGGTAAGTTTGGTATGACCGCC
GTTTGAATTACACGCGGTCGCTCGCTGTGATGTCAATGGTGGGTTACGTT
CTTGGATTGGGTGACAGACATCCTTCGAATTTGATGTTGGATCGAATGTC
CGGAAAGATTTTACATATCGATTTCGGTGATTGTTTCGaaGTTGCAATGA
CGAGAGAAAAGTTTCCCGAGAAAATCCCATTCCGTTTGACCAGAATGCTG
ACGAACGCTATGGAGGTGACGGGTATTGACGGCAACTACCGTATGACGTG
TGAAAGTGTCATGCGTGTTTTACGTGAAAACAAAGACAGTTTGATGGCCG
TTCTCGAAGCTTTCGTTTACGATCCTTTATTGAACTGGCGCTTGATTGAT
AcggAGAAACGATCAAAAGGAAGACAAGAATCTTATTCAACGCACAATGA
AGGTCACGAATTCCAAGATAACGTGGATCGAACGCACGACCGTCCACGTG
GTAAAAAGGTCACCAATCCGGAACACCCGACACAAGATCCGGAACACAGT
AATAATAAACCGGAAGCCGTCAATAAGAGAGCGTTACAAATCGTGAACCG
TGTCCGTGACAAATTGACGGGGCGCGATTTCAACAAAGACGAAGCGATAG
ATGTTGACACACAAGTTGATTTATTGATTCAACAAGCCACTTCACATGCT
AACCTCTGTCAAGCTTATATTGGATGGTAAGTTTGGTATGACCGCCGTTT
GAATTACACGCGGTCGCTCGCTGTGATGTCAATGGTGGGTTACGTTCTTG
GATTGGGTGACAGACATCCTTCGAATTTGATGTTGGATCGAATGTCCGGA
AAGATTTTACATATCGATTTCGGTGATTGTTTCGaaGTTGCAATGACGAG
AGAAAAGTTTCCCGAGAAAATCCCATTCCGTTTGACCAGAATGCTGACGA
ACGCTATGGAGGTGACGGGTATTGACGGCAACTACCGTATGACGTGTGAA
AGTGTCATGCGTGTTTTACGTGAAAACAAAGACAGTTTGATGGCCGTTCT
CGAAGCTTTCGTTTACGATCCTTTATTGAACTGGCGCTTGATTGATAcgg
AGAAACGATCAAAAGGAAGACAAGAATCTTATTCAACGCACAATGAAGGT
CACGAATTCCAAGATAACGTGGATCGAACGCACGACCGTCCACGTGGTAA
AAAGGTCACCAATCCGGAACACCCGACACAAGATCCGGAACACAGTAATA
ATAAACCGGAAGCCGTCAATAAGAGAGCGTTACAAATCGTGAACCGTGTC
CGTGACAAATTGACGGGGCGCGATTTCAACAAAGACGAAGCGATAGATGT
TGACACACAAGTTGATTTATTGATTCAACAAGCCACTTCACATGCTAACC
TCTGTCAAGCTTATATTGGATGGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_023351	XLOC_023351	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00038875-protein	TCONS_00038875-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001953	supercontig	sc0001953:7599..10320 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5423	7.88082	0	0	30.663	27.7618	30.1266	40.612	22.8191	21.5451	17.6511	14.202	19.6478	17.2576	12.4122	17.1939	23.0536	19.1243	13.1223	9.19495	7.76656	3.9982	15.2635	15.6808	45.4367	36.68	5.76367	1.18255	4.9507	4.38287

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000403	PI3/4_kinase_cat_dom
IPR003152	FATC_dom
IPR018936	PI3/4_kinase_CS
IPR011009	Kinase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0016301	kinase activity
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00038875 vs. Swiss-Prot (Human)
Match: MTOR (Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 3.315e-107
Identity = 167/235 (71.06%), Postives = 190/235 (80.85%), Query Frame = 1

Query:    1 VWYDRRLNYTRSLAVMSMVGYVLGLGDRHPSNLMLDRMSGKILHIDFGDCFEVAMTREKFPEKIPFRLTRMLTNAMEVTGIDGNYRMTCESVMRVLRENKDSLMAVLEAFVYDPLLNWRLIDT----EKRSKGRQESYSTHNEGHEFQDNVDRTHDRPRGKKVTNPEHPTQDPEHSNNKPEAVNKRALQIVNRVRDKLTGRDFNKDEAIDVDTQVDLLIQQATSHANLCQAYIGW 693
            VW+DRR NYTRSLAVMSMVGY+LGLGDRHPSNLMLDR+SGKILHIDFGDCFEVAMTREKFPEKIPFRLTRMLTNAMEVTG+DGNYR+TC +VM VLRE+KDS+MAVLEAFVYDPLLNWRL+DT     KRS+ R +SYS   +  E  D V+      +    T PE           KPEA+NK+A+QI+NRVRDKLTGRDF+ D+ +DV TQV+LLI+QATSH NLCQ YIGW
Sbjct: 2312 VWFDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLSGKILHIDFGDCFEVAMTREKFPEKIPFRLTRMLTNAMEVTGLDGNYRITCHTVMEVLREHKDSVMAVLEAFVYDPLLNWRLMDTNTKGNKRSRTRTDSYSA-GQSVEILDGVELGEPAHKKTGTTVPESIHSFIGDGLVKPEALNKKAIQIINRVRDKLTGRDFSHDDTLDVPTQVELLIKQATSHENLCQCYIGW 2545

The following BLAST results are available for this feature:

BLAST of TCONS_00038875 vs. Swiss-Prot (Human)

BLAST of TCONS_00038875 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MTOR	3.315e-107	71.06	Serine/threonine-protein kinase mTOR OS=Homo sapie...	[more]

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TCONS_00038875 (transcript) - C. hemisphaerica