TCONS_00038874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038874
Unique NameTCONS_00038874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length695

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038874 ID=TCONS_00038874|Name=TCONS_00038874|organism=Clytia hemisphaerica|type=transcript|length=695bp
CTTCAGGCGTACGGTCGTGATTTGATGGAAGCAAGAGATTGGTGTCGTAA
ATACCAGAACACGAAGAATGATAAAGATTTGACGCAAGCCTGGGATTTGT
ATTATCACGTCTTCAGAAGAATCTCTAAACAACTACCTCAGCTAACATCT
ATCGAATTGCAATATGCTTCACCGAAACTGTTGGAATGTAAAGACCTGGA
ACTAGCTGTCCCTGGTACTTACGAACCTGGCAAACcgatcacaaaaatca
aaactatcAGTACTACTCTCAATGTCATCACTTCAAAACAAAGACCAAGA
AAGTTGAGCATTACTGGAAGCAACGGTGCAGAATTCATGTTCTTACTGAA
AGGCCACGAAGATTTGCGACAAGACGAACGTGTCATGCAACTCTTTGGTC
TTGTCAATACACTGTTAGCCAACGACTCGGTTACTTTCAAACGACATTTA
AGTATTCAACGTTACCCAGTTATTCCGTTATCAACAAACTCGGGATTAAT
CGGATGGGTACCGCATTCAGATACTTTGCACACGCTCATTCGAGACTATC
GTGAAAAGAAGAAGATTATGTTGAACATCGAACATCGAATCATGTTAAAA
ATGACGCCCGACTATGAACATTTGACGTTGATTCAAAAAGTGGAGGTTTT
CGAACATGCTTTGAACACAACACAGGGTGATGATTTAGCGAAAGT
Run BLAST on NCBI

protein sequence of TCONS_00038874-protein

>TCONS_00038874-protein ID=TCONS_00038874-protein|Name=TCONS_00038874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
LQAYGRDLMEARDWCRKYQNTKNDKDLTQAWDLYYHVFRRISKQLPQLTS
IELQYASPKLLECKDLELAVPGTYEPGKPITKIKTISTTLNVITSKQRPR
KLSITGSNGAEFMFLLKGHEDLRQDERVMQLFGLVNTLLANDSVTFKRHL
SIQRYPVIPLSTNSGLIGWVPHSDTLHTLIRDYREKKKIMLNIEHRIMLK
MTPDYEHLTLIQKVEVFEHALNTTQGDDLAK
Run BLAST on NCBI

transcript from alignment at sc0001953:4091..7307+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038874 ID=TCONS_00038874|Name=TCONS_00038874|organism=Clytia hemisphaerica|type=transcript|length=3217bp|location=Sequence derived from alignment at sc0001953:4091..7307+ (Clytia hemisphaerica)
CTTCAGGCGTACGGTCGTGATTTGATGGAAGCAAGAGATTGGTGTCGTAA
ATACCAGAACACGAAGAATGATAAAGATTTGACGCAAGCCTGGGATTTGT
ATTATCACGTCTTCAGAAGAATCTCTAAACAACTACCTCAGGTATCCTCT
TTAAACCTTAAGAATGAAATCTGATTGATAGCAGTAAAATCATGTCTAAT
TTTCTTGTGTTTTGGGTGTACCACGATATTTGTTCCACGAAAAGCAATTT
TTCTTATGCTAGTACATAATCTGAAAACTCTCTAGGAGAAAGGGGAGAAC
TTTGGCAAAAAGTCTCCTgcaaaaattttagtttcaCAAATAACATCACT
GAAATCACTTAGAATGAGTTTCCTTTAGTTTACTTTAAATCAATTCTTAT
GTTTCAATTTACAGCTAACATCTATCGAATTGCAATATGCTTCACCGAAA
CTGTTGGAATGTAAAGACCTGGAACTAGCTGTCCCTGGTACTTACGAACC
TGGCAAACcgatcacaaaaatcaaaactatcAGTACTACTCTCAATGTCA
TCACTTCAAAACAAAGACCAAGAAAGTTGAGCATTACTGGTAAGAAAATA
GTTCTTAAGTCTGTTTTTGTATCACGCCGTTTCGAGCATGTCAAGATCTC
TCACTTATCAAAACCACTGAACTTGGACCCTGGGCAAAGTTTCTCGATCC
TGGCCTAGCAAAATCTTTGGTCggagttatttaaaaatggTACCCTAAAG
ACTGTGAGTTAAACGATTTCAACATTTAATCCAACATAGAAATTGAAATG
TTGGTCAAATGTTGGATGAATTTTGGAATGATATTGGATCTCCTTAAAAT
CGTTTACCCACAGTGTCCAACAtcgttttcatccaacatgggtgttcatt
cattcgttttttaattcattcttttcaaattaaTAATGGCGTCTGCAGAG
GATTTTTATAACCAGTGCTGTCATGCCGACATCTGACAGTCTGAcaattg
gacccttacagtgcagagaaaatctaagcaaaaatcgacccttacgtgCT
TTTTGTTTTGTAATTTATTAAGGCAAAATTGTCAGACCAAAAACTTTTGC
CTCACTTTtttcacccttacagtgcactttcctgAAAAACGTACCCTTAA
GGTCTGCACCCTACCTACGGCAGATCGCTTAAGTTCATTACCCGCCCCCC
GGAGGGAATCGTTTACCCCGGCCTTCATGGTAGCAATTGTCAATGTGGGT
GAAATAGTTTTTAAACGGGGAAACTACAATAATGGTATTTGACTCGTGTT
GCCAAATCTCCAACTTTAGGTatgaaccattgagtttaaagcccgaaggg
ctagagttcaatctctaacctttctcaggcaagaaaaagtgaagccttaa
aaaatgcgccgcattttNTTTTCAAATTAATAATGGCGTCTGCAGAGGAT
TTTTATAACCAGTGCTGTCATGCCGACATCTGACAGTCTGAcaattggac
ccttacagtgcagagaaaatctaagcaaaaatcgacccttacggtgcatt
gTTTTGTAATTTAATAAGGCAAAATTGTCAGACCAAAAACTTTTGCCTCA
CTTTTtttcacccttacagtgcactttcctgaaaaacatacccttaaggT
CTGCACCCTACCTACGGCAGATTTTCCGAACAAAAATATTCGATCTAATA
GCTTCTCTCCAACACAAGAATCGAGAGAGAACACAAAGGAATAGATGTTG
GacaaaatgtttgatggcgatcaaactcCCATCCAACACTTATTTCCTTC
TGCCAACataatttgttattcttttccGATTTTTGCATTCGAGTAAACGT
GTCCAACATTCCGTTCAACAGAAAGAAATTGGTATGTTGGAtggaatgtt
ggaatcgtttacccCGGCCTTCATGGTAGCAATTGTCAATGTGGGTGAAA
TAGTTTTTAAACGGGGAAACTACAATAATGGTATTTGACTTGTGTTGCCA
AATCTCCAACTTTAGGTatgaaccattgagtttaaagcccgaagggctag
agttcaatccctaacctttctcaggcaagaaaaagtgaagccttaaaaaa
tgcgccgcatttttgacgacagattgaatctagcaattcctttgtttacg
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNgtttacgattgatatttttttcga
aatttagcggtaaattttagtttcaatctttcatttgtgtaaaaaccagg
cgagccgctcaaggctgcgcaactttggcaggatttgttggcttcaaatc
ctaccatggagatgacttctagcccttcgggcttatacttcattggtatG
AACTATATGATGAAGACATCTCCGTCAATAAAACTCGTATGCCCCGAAAC
TGTGATTTCTATAGAATGATAACCTTTGTACCCATATTTTTTACCATTAT
AGGAAGCAACGGTGCAGAATTCATGTTCTTACTGAAAGGCCACGAAGATT
TGCGACAAGACGAACGTGTCATGCAACTCTTTGGTCTTGTCAATACACTG
TTAGCCAACGACTCGGTTACTTTCAAACGACATTTAAGGTAAGAACGtca
actctctataattcgattctttattattttaatctttttttaattcgaac
taaaagaTTGGTTCTCTCAAACCCGAAAGGTtatgtaaaaattattttcg
tcatccgaatatttctataattcgaataatatttttgttcccttaaagat
cgaattatagagagacaAGACAAACAACAATTCTCATAGATTCACTTGTT
GTGACCTTGTTGTCCATTAGTTTGTTGGGGCTCAAATCTCCTATTTTCAA
ACCATACTAATTGACAATTTTTAGTATTCAACGTTACCCAGTTATTCCGT
TATCAACAAACTCGGGATTAATCGGATGGGTACCGCATTCAGATACTTTG
CACACGCTCATTCGAGACTATCGTGAAAAGAAGAAGATTATGTTGAACAT
CGAACATCGAATCATGTTAAAAATGACGCCCGACTATGAACATTTGACGT
TGATTCAAAAAGTGGAGGTTTTCGAACATGCTTTGAACACAACACAGGGT
GATGATTTAGCGAAAGT

Coding sequence (CDS) from alignment at sc0001953:4091..7307+

>TCONS_00038874 ID=TCONS_00038874|Name=TCONS_00038874|organism=Clytia hemisphaerica|type=CDS|length=2772bp|location=Sequence derived from alignment at sc0001953:4091..7307+ (Clytia hemisphaerica)
CTTCAGGCGTACGGTCGTGATTTGATGGAAGCAAGAGATTGGTGTCGTAA
ATACCAGAACACGAAGAATGATAAAGATTTGACGCAAGCCTGGGATTTGT
ATTATCACGTCTTCAGAAGAATCTCTAAACAACTACCTCAGCTAACATCT
ATCGAATTGCAATATGCTTCACCGAAACTGTTGGAATGTAAAGACCTGGA
ACTAGCTGTCCCTGGTACTTACGAACCTGGCAAACcgatcacaaaaatca
aaactatcAGTACTACTCTCAATGTCATCACTTCAAAACAAAGACCAAGA
AAGTTGAGCATTACTGGAAGCAACGGTGCAGAATTCATGTTCTTACTGAA
AGGCCACGAAGATTTGCGACAAGACGAACGTGTCATGCAACTCTTTGGTC
TTGTCAATACACTGTTAGCCAACGACTCGGTTACTTTCAAACGACATTTA
AGTATTCAACGTTACCCAGTTATTCCGTTATCAACAAACTCGGGATTAAT
CGGATGGGTACCGCATTCAGATACTTTGCACACGCTCATTCGAGACTATC
GTGAAAAGAAGAAGATTATGTTGAACATCGAACATCGAATCATGTTAAAA
ATGACGCCCGACTATGAACATTTGACGTTGATTCAAAAAGTGGAGGTTTT
CGAACATGCTTTGAACACAACACAGGGTGATGATTTAGCGAAACTTCAGG
CGTACGGTCGTGATTTGATGGAAGCAAGAGATTGGTGTCGTAAATACCAG
AACACGAAGAATGATAAAGATTTGACGCAAGCCTGGGATTTGTATTATCA
CGTCTTCAGAAGAATCTCTAAACAACTACCTCAGCTAACATCTATCGAAT
TGCAATATGCTTCACCGAAACTGTTGGAATGTAAAGACCTGGAACTAGCT
GTCCCTGGTACTTACGAACCTGGCAAACcgatcacaaaaatcaaaactat
cAGTACTACTCTCAATGTCATCACTTCAAAACAAAGACCAAGAAAGTTGA
GCATTACTGGAAGCAACGGTGCAGAATTCATGTTCTTACTGAAAGGCCAC
GAAGATTTGCGACAAGACGAACGTGTCATGCAACTCTTTGGTCTTGTCAA
TACACTGTTAGCCAACGACTCGGTTACTTTCAAACGACATTTAAGTATTC
AACGTTACCCAGTTATTCCGTTATCAACAAACTCGGGATTAATCGGATGG
GTACCGCATTCAGATACTTTGCACACGCTCATTCGAGACTATCGTGAAAA
GAAGAAGATTATGTTGAACATCGAACATCGAATCATGTTAAAAATGACGC
CCGACTATGAACATTTGACGTTGATTCAAAAAGTGGAGGTTTTCGAACAT
GCTTTGAACACAACACAGGGTGATGATTTAGCGAAACTTCAGGCGTACGG
TCGTGATTTGATGGAAGCAAGAGATTGGTGTCGTAAATACCAGAACACGA
AGAATGATAAAGATTTGACGCAAGCCTGGGATTTGTATTATCACGTCTTC
AGAAGAATCTCTAAACAACTACCTCAGCTAACATCTATCGAATTGCAATA
TGCTTCACCGAAACTGTTGGAATGTAAAGACCTGGAACTAGCTGTCCCTG
GTACTTACGAACCTGGCAAACcgatcacaaaaatcaaaactatcAGTACT
ACTCTCAATGTCATCACTTCAAAACAAAGACCAAGAAAGTTGAGCATTAC
TGGAAGCAACGGTGCAGAATTCATGTTCTTACTGAAAGGCCACGAAGATT
TGCGACAAGACGAACGTGTCATGCAACTCTTTGGTCTTGTCAATACACTG
TTAGCCAACGACTCGGTTACTTTCAAACGACATTTAAGTATTCAACGTTA
CCCAGTTATTCCGTTATCAACAAACTCGGGATTAATCGGATGGGTACCGC
ATTCAGATACTTTGCACACGCTCATTCGAGACTATCGTGAAAAGAAGAAG
ATTATGTTGAACATCGAACATCGAATCATGTTAAAAATGACGCCCGACTA
TGAACATTTGACGTTGATTCAAAAAGTGGAGGTTTTCGAACATGCTTTGA
ACACAACACAGGGTGATGATTTAGCGAAACTTCAGGCGTACGGTCGTGAT
TTGATGGAAGCAAGAGATTGGTGTCGTAAATACCAGAACACGAAGAATGA
TAAAGATTTGACGCAAGCCTGGGATTTGTATTATCACGTCTTCAGAAGAA
TCTCTAAACAACTACCTCAGCTAACATCTATCGAATTGCAATATGCTTCA
CCGAAACTGTTGGAATGTAAAGACCTGGAACTAGCTGTCCCTGGTACTTA
CGAACCTGGCAAACcgatcacaaaaatcaaaactatcAGTACTACTCTCA
ATGTCATCACTTCAAAACAAAGACCAAGAAAGTTGAGCATTACTGGAAGC
AACGGTGCAGAATTCATGTTCTTACTGAAAGGCCACGAAGATTTGCGACA
AGACGAACGTGTCATGCAACTCTTTGGTCTTGTCAATACACTGTTAGCCA
ACGACTCGGTTACTTTCAAACGACATTTAAGTATTCAACGTTACCCAGTT
ATTCCGTTATCAACAAACTCGGGATTAATCGGATGGGTACCGCATTCAGA
TACTTTGCACACGCTCATTCGAGACTATCGTGAAAAGAAGAAGATTATGT
TGAACATCGAACATCGAATCATGTTAAAAATGACGCCCGACTATGAACAT
TTGACGTTGATTCAAAAAGTGGAGGTTTTCGAACATGCTTTGAACACAAC
ACAGGGTGATGATTTAGCGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023350XLOC_023350Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038874-exon-sc0001953-1491911889:4091..4231TCONS_00038874-exon-sc0001953-1491911889:4091..4231Clytia hemisphaericaexon
TCONS_00038874-exon-sc0001953-1510915933:4091..4231TCONS_00038874-exon-sc0001953-1510915933:4091..4231Clytia hemisphaericaexon
TCONS_00038874-exon-sc0001953-1575043694:4091..4231TCONS_00038874-exon-sc0001953-1575043694:4091..4231Clytia hemisphaericaexon
TCONS_00038874-exon-sc0001953-1491911889:4505..4679TCONS_00038874-exon-sc0001953-1491911889:4505..4679Clytia hemisphaericaexon
TCONS_00038874-exon-sc0001953-1510915933:4505..4679TCONS_00038874-exon-sc0001953-1510915933:4505..4679Clytia hemisphaericaexon
TCONS_00038874-exon-sc0001953-1575043694:4505..4679TCONS_00038874-exon-sc0001953-1575043694:4505..4679Clytia hemisphaericaexon
TCONS_00038874-exon-sc0001953-1491911889:6643..6778TCONS_00038874-exon-sc0001953-1491911889:6643..6778Clytia hemisphaericaexon
TCONS_00038874-exon-sc0001953-1510915933:6643..6778TCONS_00038874-exon-sc0001953-1510915933:6643..6778Clytia hemisphaericaexon
TCONS_00038874-exon-sc0001953-1575043694:6643..6778TCONS_00038874-exon-sc0001953-1575043694:6643..6778Clytia hemisphaericaexon
TCONS_00038874-exon-sc0001953-1491911889:7065..7307TCONS_00038874-exon-sc0001953-1491911889:7065..7307Clytia hemisphaericaexon
TCONS_00038874-exon-sc0001953-1510915933:7065..7307TCONS_00038874-exon-sc0001953-1510915933:7065..7307Clytia hemisphaericaexon
TCONS_00038874-exon-sc0001953-1575043694:7065..7307TCONS_00038874-exon-sc0001953-1575043694:7065..7307Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038874-proteinTCONS_00038874-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001953supercontigsc0001953:4091..7307 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.5146	15.9421	8.20452	8.756	29.649	23.4355	27.4285	34.3903	29.1603	29.4282	28.3594	23.3004	22.9117	20.5933	16.2831	21.2249	21.99	22.6388	16.6468	20.0945	24.2162	21.7253	19.2233	24.7951	38.082	29.5042	20.1226	21.97	18.8312	17.5596
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009076FRB_dom
IPR000403PI3/4_kinase_cat_dom
IPR018936PI3/4_kinase_CS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0044877macromolecular complex binding
GO:0016301kinase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016301 kinase activity
molecular_function GO:0044877 macromolecular complex binding
Blast
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BLAST of TCONS_00038874 vs. Swiss-Prot (Human)
Match: MTOR (Serine/threonine-protein kinase mTOR OS=Homo sapiens GN=MTOR PE=1 SV=1)

HSP 1 Score: 385.956 bits (990), Expect = 2.341e-122
Identity = 185/230 (80.43%), Postives = 209/230 (90.87%), Query Frame = 1 
Query:    4 QAYGRDLMEARDWCRKYQNTKNDKDLTQAWDLYYHVFRRISKQLPQLTSIELQYASPKLLECKDLELAVPGTYEPGXXXXXXXXXXXXLNVITSKQRPRKLSITGSNGAEFMFLLKGHEDLRQDERVMQLFGLVNTLLANDSVTFKRHLSIQRYPVIPLSTNSGLIGWVPHSDTLHTLIRDYREKKKIMLNIEHRIMLKMTPDYEHLTLIQKVEVFEHALNTTQGDDLAK 693
            QAYGRDLMEA++WCRKY  + N KDLTQAWDLYYHVFRRISKQLPQLTS+ELQY SPKLL C+DLELAVPGTY+P +PI +I++I+ +L VITSKQRPRKL++ GSNG EF+FLLKGHEDLRQDERVMQLFGLVNTLLAND  + +++LSIQRY VIPLSTNSGLIGWVPH DTLH LIRDYREKKKI+LNIEHRIML+M PDY+HLTL+QKVEVFEHA+N T GDDLAK
Sbjct: 2072 QAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYYHVFRRISKQLPQLTSLELQYVSPKLLMCRDLELAVPGTYDPNQPIIRIQSIAPSLQVITSKQRPRKLTLMGSNGHEFVFLLKGHEDLRQDERVMQLFGLVNTLLANDPTSLRKNLSIQRYAVIPLSTNSGLIGWVPHCDTLHALIRDYREKKKILLNIEHRIMLRMAPDYDHLTLMQKVEVFEHAVNNTAGDDLAK 2301
The following BLAST results are available for this feature:
BLAST of TCONS_00038874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTOR2.341e-12280.43Serine/threonine-protein kinase mTOR OS=Homo sapie... [more]
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