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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038873 ID=TCONS_00038873|Name=TCONS_00038873|organism=Clytia hemisphaerica|type=transcript|length=1766bp
GGTTGTTTATGTAATTTAACCTATCAAATGGCACTTTTTCAACTAAAGCA
ACATTTTCCAATTTGGATGCTCTGCTTAGGGCAGTGTATGTGATACCAAG
GTTAAGTTTCTCCATGAAAATCTCTTTATTAAGCTTTATTCGAATATGAG
TACAAGGTTCATTAGGACCTATAGTCATACCTTGGCTTTTAGAAATTGGT
ATACAATATCCAGGCATCAAAGGAAGTCCTGTTCTAGAACAACAGTTACT
TTCACAACGTGACTCATTTACTGGTATTGGAACCCAAGTAGGATGTTCTG
GTAGCCAAGCTGGGCCCTTGTACCTTGGGAAATCTACAACTACTGCTTCT
GGAAATTCAGGAGGGGCTTTTCCCCTGCCAAACAAAATGGCAATCACTTT
TCCAATGGCACCATTATTCAAACCAAAAGGTGTGAGACTAAATTGATTTT
TAGTCAAAAGTACACGACTTCCAACAGCAATATGTGAAGTTGCAGGTATT
TGGCCCATTTGATTGACTGATTGAGTGTGATGACGCCCTTTTCCTTTGCT
TGGTATAGTAGCAACAGGAACTTCCAAATCTGCAAGCTTGTTGTGGTTTT
CAACATTCACTTCCTGCCATGTTTCCATGACAGTTAGACAAGTTTCTAAT
TTAAAATATTCTTTTTCACTTTCAGAAAGCTCACCCTCATACCTCGAGTT
GATTGTTTTCCAATCATCGACATTAAGTTTACCCTCTCTGATTCTCAGTA
ACATTTCCAAAAAAGATAATTGGTCAGGTCCCTGACGCATTGTTTCATTC
AAAACAACATAATGCGAAAATGTACGGTAGATTCCATAGCCAGCAAGCTT
ATCTGGCGCAGCAGAAGATAATGGCTCTACATGTAAGTCTTTTGACCCGA
CTGGTCCCAATTAACACAAATCCCCAAAAAAATTTACCGTTGGGATCGCA
CCAAAGTTATTGGAGAAGTCACATGTGGCCTCTTTGAAACGTTGACTACA
CCATGCCAGCACGCGTGGGCTATACATTCCTCTTTCATCTAAATTTAAAG
TCATTAATTTCATGGTATCACCCTCAAGAGTACTACCAGTGAGTATGCGC
AAATTAGTCAAAGCTGTACTATTCAAGGGCTTATCAGTTAGTTGCACTGT
TTTTGTGTTTTTCTTCATTCTTGGAATACTGGTTGTGGAGTGAACTGTTC
TTCCTAAAGGAAGAAGAACAGATGCAGCTCCTGTAGGTGCTAAATTCATT
ACGGCATCATTGCGGTTACGAATTCTCCGTGACAGATATGTAAGGGCAAC
AATAGTAAATGTTTTACCGCTTCCCGCCGTCCCTTGTATCAGGAGACGCA
CATGATCATGCTTATCATTGCTGACAGCAGACATTAGATTTAGAATATTG
ATTGCAATTATGACTCGCTGCAGAGTGTTTGCTTTCAATAAATCCATATT
GGGTGGTAAATCACATTGCTGATTCAGTGCCCTTTGTCTTTCTTCAGCCA
CATTTGACACATTCTGAAGCCAATTTGAGGTGCTGTCAGACCAATTACCT
CCAAAGCATTCAGTCGCATAAAGATGCCAATCAAAACTTTCTCCACCGTC
AGGCAGATTCTTGAACACATGCAAATCTTCAAATGCTTGCGGATTATTTT
CAGCTAAATACTGCAGATATAAATTTTCATTCCTAATGTCGCTTTCAAAC
TCATTGTCAGATTCAGAGTCATGTTCAGAAGAGCTTTCATCAGGATCTTG
GGCTTTCTTGTTTGTG Run BLAST on NCBI protein sequence of TCONS_00038873-protein >TCONS_00038873-protein ID=TCONS_00038873-protein|Name=TCONS_00038873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
TNKKAQDPDESSSEHDSESDNEFESDIRNENLYLQYLAENNPQAFEDLHV
FKNLPDGGESFDWHLYATECFGGNWSDSTSNWLQNVSNVAEERQRALNQQ
CDLPPNMDLLKANTLQRVIIAINILNLMSAVSNDKHDHVRLLIQGTAGSG
KTFTIVALTYLSRRIRNRNDAVMNLAPTGAASVLLPLGRTVHSTTSIPRM
KKNTKTVQLTDKPLNSTALTNLRILTGSTLEGDTMKLMTLNLDERGMYSP
RVLAWCSQRFKEATCDFSNNFGAIPTVNFFGDLC Run BLAST on NCBI transcript from alignment at sc0001951:31145..32910 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038873 ID=TCONS_00038873|Name=TCONS_00038873|organism=Clytia hemisphaerica|type=transcript|length=1766bp|location=Sequence derived from alignment at sc0001951:31145..32910 (Clytia hemisphaerica)
CACAAACAAGAAAGCCCAAGATCCTGATGAAAGCTCTTCTGAACATGACT
CTGAATCTGACAATGAGTTTGAAAGCGACATTAGGAATGAAAATTTATAT
CTGCAGTATTTAGCTGAAAATAATCCGCAAGCATTTGAAGATTTGCATGT
GTTCAAGAATCTGCCTGACGGTGGAGAAAGTTTTGATTGGCATCTTTATG
CGACTGAATGCTTTGGAGGTAATTGGTCTGACAGCACCTCAAATTGGCTT
CAGAATGTGTCAAATGTGGCTGAAGAAAGACAAAGGGCACTGAATCAGCA
ATGTGATTTACCACCCAATATGGATTTATTGAAAGCAAACACTCTGCAGC
GAGTCATAATTGCAATCAATATTCTAAATCTAATGTCTGCTGTCAGCAAT
GATAAGCATGATCATGTGCGTCTCCTGATACAAGGGACGGCGGGAAGCGG
TAAAACATTTACTATTGTTGCCCTTACATATCTGTCACGGAGAATTCGTA
ACCGCAATGATGCCGTAATGAATTTAGCACCTACAGGAGCTGCATCTGTT
CTTCTTCCTTTAGGAAGAACAGTTCACTCCACAACCAGTATTCCAAGAAT
GAAGAAAAACACAAAAACAGTGCAACTAACTGATAAGCCCTTGAATAGTA
CAGCTTTGACTAATTTGCGCATACTCACTGGTAGTACTCTTGAGGGTGAT
ACCATGAAATTAATGACTTTAAATTTAGATGAAAGAGGAATGTATAGCCC
ACGCGTGCTGGCATGGTGTAGTCAACGTTTCAAAGAGGCCACATGTGACT
TCTCCAATAACTTTGGTGCGATCCCAACGGTAAATTTTTTTGGGGATTTG
TGTTAATTGGGACCAGTCGGGTCAAAAGACTTACATGTAGAGCCATTATC
TTCTGCTGCGCCAGATAAGCTTGCTGGCTATGGAATCTACCGTACATTTT
CGCATTATGTTGTTTTGAATGAAACAATGCGTCAGGGACCTGACCAATTA
TCTTTTTTGGAAATGTTACTGAGAATCAGAGAGGGTAAACTTAATGTCGA
TGATTGGAAAACAATCAACTCGAGGTATGAGGGTGAGCTTTCTGAAAGTG
AAAAAGAATATTTTAAATTAGAAACTTGTCTAACTGTCATGGAAACATGG
CAGGAAGTGAATGTTGAAAACCACAACAAGCTTGCAGATTTGGAAGTTCC
TGTTGCTACTATACCAAGCAAAGGAAAAGGGCGTCATCACACTCAATCAG
TCAATCAAATGGGCCAAATACCTGCAACTTCACATATTGCTGTTGGAAGT
CGTGTACTTTTGACTAAAAATCAATTTAGTCTCACACCTTTTGGTTTGAA
TAATGGTGCCATTGGAAAAGTGATTGCCATTTTGTTTGGCAGGGGAAAAG
CCCCTCCTGAATTTCCAGAAGCAGTAGTTGTAGATTTCCCAAGGTACAAG
GGCCCAGCTTGGCTACCAGAACATCCTACTTGGGTTCCAATACCAGTAAA
TGAGTCACGTTGTGAAAGTAACTGTTGTTCTAGAACAGGACTTCCTTTGA
TGCCTGGATATTGTATACCAATTTCTAAAAGCCAAGGTATGACTATAGGT
CCTAATGAACCTTGTACTCATATTCGAATAAAGCTTAATAAAGAGATTTT
CATGGAGAAACTTAACCTTGGTATCACATACACTGCCCTAAGCAGAGCAT
CCAAATTGGAAAATGTTGCTTTAGTTGAAAAAGTGCCATTTGATAGGTTA
AATTACATAAACAACC Coding sequence (CDS) from alignment at sc0001951:31145..32910 >TCONS_00038873 ID=TCONS_00038873|Name=TCONS_00038873|organism=Clytia hemisphaerica|type=CDS|length=855bp|location=Sequence derived from alignment at sc0001951:31145..32910 (Clytia hemisphaerica)
ACAAACAAGAAAGCCCAAGATCCTGATGAAAGCTCTTCTGAACATGACTC
TGAATCTGACAATGAGTTTGAAAGCGACATTAGGAATGAAAATTTATATC
TGCAGTATTTAGCTGAAAATAATCCGCAAGCATTTGAAGATTTGCATGTG
TTCAAGAATCTGCCTGACGGTGGAGAAAGTTTTGATTGGCATCTTTATGC
GACTGAATGCTTTGGAGGTAATTGGTCTGACAGCACCTCAAATTGGCTTC
AGAATGTGTCAAATGTGGCTGAAGAAAGACAAAGGGCACTGAATCAGCAA
TGTGATTTACCACCCAATATGGATTTATTGAAAGCAAACACTCTGCAGCG
AGTCATAATTGCAATCAATATTCTAAATCTAATGTCTGCTGTCAGCAATG
ATAAGCATGATCATGTGCGTCTCCTGATACAAGGGACGGCGGGAAGCGGT
AAAACATTTACTATTGTTGCCCTTACATATCTGTCACGGAGAATTCGTAA
CCGCAATGATGCCGTAATGAATTTAGCACCTACAGGAGCTGCATCTGTTC
TTCTTCCTTTAGGAAGAACAGTTCACTCCACAACCAGTATTCCAAGAATG
AAGAAAAACACAAAAACAGTGCAACTAACTGATAAGCCCTTGAATAGTAC
AGCTTTGACTAATTTGCGCATACTCACTGGTAGTACTCTTGAGGGTGATA
CCATGAAATTAATGACTTTAAATTTAGATGAAAGAGGAATGTATAGCCCA
CGCGTGCTGGCATGGTGTAGTCAACGTTTCAAAGAGGCCACATGTGACTT
CTCCAATAACTTTGGTGCGATCCCAACGGTAAATTTTTTTGGGGATTTGT
GTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038873-exon-sc0001951-1491911889:31145..32910 | TCONS_00038873-exon-sc0001951-1491911889:31145..32910 | Clytia hemisphaerica | exon |
| TCONS_00038873-exon-sc0001951-1510915933:31145..32910 | TCONS_00038873-exon-sc0001951-1510915933:31145..32910 | Clytia hemisphaerica | exon |
| TCONS_00038873-exon-sc0001951-1575043694:31145..32910 | TCONS_00038873-exon-sc0001951-1575043694:31145..32910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001951 | supercontig | sc0001951:31145..32910 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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