TCONS_00038872 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038872
Unique NameTCONS_00038872
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038872 ID=TCONS_00038872|Name=TCONS_00038872|organism=Clytia hemisphaerica|type=transcript|length=721bp
ttcgcaggtctattgacctctatgaaacaatctcatttaaatttacagtt
tatctttataatgtaacaaagttctaaCTTCTAGCCACAAGGGCCTCTGT
AACTGGTCGTGATTATTCTTAATGTACAAGTACTTTTTTCATATAAAGTC
GAGTTCTTGGGCTTCCACGGACTTTCCACTGGAAGCTGTCATCGTTCTTC
TTCATATTTCGTTCTTTTGCCTTTTGGCACCATTCCTTAACGAGGTTTCG
TTCGTTTTTTGACAGATCGTCTGTTGCTTTAAATTCGTAACGGTGTCTTG
AATTGCAGATCCCCTTTAGTACCTTTTCTTTATCTTCCTCACTTTGAAAT
GTAAGTTTCAATGGACGATAATGTTTTTTCTCTTCGTTTTCAAGTGTTAC
GGTACcgattctttctgatttttttaccTTGATTTCTCCTATATTCAGTT
TTgaaattacatgtttttctaaTGTAGTCGATATCTTTCTTATCCGCTAT
CTCTTTCGTGTCTTCCGTAGTTTCATATAGATGATGTATCATGAGATTAC
ACGAAGTCGCTTCAATCCATTTTTTatccttattttctttttcaaggaaa
cGCTTTATCGTTTTCGTTTGCGACTCAAGATGTTTCTTTGTTATTTCTGA
ATAACTTGATTTTTCACAAGCAATTTCATTCACAGACGAAGATTTCTTGT
TTgcgattttatttattttgc
Run BLAST on NCBI

protein sequence of TCONS_00038872-protein

>TCONS_00038872-protein ID=TCONS_00038872-protein|Name=TCONS_00038872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
KINKIANKKSSSVNEIACEKSSYSEITKKHLESQTKTIKRFLEKENKDKK
WIEATSCNLMIHHLYETTEDTKEIADKKDIDYIRKTCNFKTEYRRNQGKK
IRKNRYRNT
Run BLAST on NCBI

transcript from alignment at sc0001951:22873..23593

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038872 ID=TCONS_00038872|Name=TCONS_00038872|organism=Clytia hemisphaerica|type=transcript|length=721bp|location=Sequence derived from alignment at sc0001951:22873..23593 (Clytia hemisphaerica)
gcaaaataaataaaatcgcAAACAAGAAATCTTCGTCTGTGAATGAAATT
GCTTGTGAAAAATCAAGTTATTCAGAAATAACAAAGAAACATCTTGAGTC
GCAAACGAAAACGATAAAGCgtttccttgaaaaagaaaataaggatAAAA
AATGGATTGAAGCGACTTCGTGTAATCTCATGATACATCATCTATATGAA
ACTACGGAAGACACGAAAGAGATAGCGGATAAGAAAGATATCGACTACAt
tagaaaaacatgtaatttcAAAACTGAATATAGGAGAAATCAAggtaaaa
aaatcagaaagaatcgGTACCGTAACACTTGAAAACGAAGAGAAAAAACA
TTATCGTCCATTGAAACTTACATTTCAAAGTGAGGAAGATAAAGAAAAGG
TACTAAAGGGGATCTGCAATTCAAGACACCGTTACGAATTTAAAGCAACA
GACGATCTGTCAAAAAACGAACGAAACCTCGTTAAGGAATGGTGCCAAAA
GGCAAAAGAACGAAATATGAAGAAGAACGATGACAGCTTCCAGTGGAAAG
TCCGTGGAAGCCCAAGAACTCGACTTTATATGAAAAAAGTACTTGTACAT
TAAGAATAATCACGACCAGTTACAGAGGCCCTTGTGGCTAGAAGttagaa
ctttgttacattataaagataaactgtaaatttaaatgagattgtttcat
agaggtcaatagacctgcgaa

Coding sequence (CDS) from alignment at sc0001951:22873..23593

>TCONS_00038872 ID=TCONS_00038872|Name=TCONS_00038872|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0001951:22873..23593 (Clytia hemisphaerica)
aaaataaataaaatcgcAAACAAGAAATCTTCGTCTGTGAATGAAATTGC
TTGTGAAAAATCAAGTTATTCAGAAATAACAAAGAAACATCTTGAGTCGC
AAACGAAAACGATAAAGCgtttccttgaaaaagaaaataaggatAAAAAA
TGGATTGAAGCGACTTCGTGTAATCTCATGATACATCATCTATATGAAAC
TACGGAAGACACGAAAGAGATAGCGGATAAGAAAGATATCGACTACAtta
gaaaaacatgtaatttcAAAACTGAATATAGGAGAAATCAAggtaaaaaa
atcagaaagaatcgGTACCGTAACACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023348XLOC_023348Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038872-proteinTCONS_00038872-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038872-exon-sc0001951-1491911889:22873..23593TCONS_00038872-exon-sc0001951-1491911889:22873..23593Clytia hemisphaericaexon
TCONS_00038872-exon-sc0001951-1510915933:22873..23593TCONS_00038872-exon-sc0001951-1510915933:22873..23593Clytia hemisphaericaexon
TCONS_00038872-exon-sc0001951-1575043694:22873..23593TCONS_00038872-exon-sc0001951-1575043694:22873..23593Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001951supercontigsc0001951:22873..23593 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.49126	1.07373	2.4387	2.97458	1.43534	0.796155	0.754056	1.83685	0.805667	1.22923	1.93033	1.02599	1.07082	1.65282	1.0131	1.07262	0.853136	0.960525	0.776517	0.969525	1.05213	0.791636	0.707021	0.4731	1.52357	1.50601	0.675879	1.36933	0.796469	0.716061
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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