TCONS_00038871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038871
Unique NameTCONS_00038871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038871 ID=TCONS_00038871|Name=TCONS_00038871|organism=Clytia hemisphaerica|type=transcript|length=811bp
CACCATTAAACCCATGTTTATTTGCATataattttaggaaatttgCTGCT
TTGTTGTTAATCAAATTTACCGTCACTTCGCCCGCTCCGTTGTTGCCCCC
ATCGTCGGCAGAGTTGATCAGTCTGGTGTACAATTCAGCCCAACCATCAT
CTTCCACAGAATCTATTGCTCTTCTTTTTGATGCCATTTCTTGTGGAGCC
CTCCTTGTTGTCTCGTGCCTTTTGTTAAATGAATGAATGGCcgttttttt
gcgtttttaaaGTTGAGCACTAGAAAGTCCTCACCGTGACCGTTGAGCTT
TACAGTGGCTTCTAAAATATCCATATTTAGAATATGAGTTAAACCGTTAA
ACATGTCAATAGCTTCTTTTctgaaattgacgtcattttttagaaaGAGC
CGTTTTAGCATTTCAAGGGTTTCTTTTAAataagtgacgtcacaattttC
GAAACGCCAACTGCAAGAGTTTTTTTCTGCTCGCTCCTGCGCAGTGTGAC
GTCTATTTAAGAAGTAGGTTGTAGGTTACGAAggttcaaaaagttaagag
aaatttcaaaatggcggcaggAATGTTTTGTTGGTTATGAAACGTTGGTT
AAGAAGGTAACCTTCTTTAATGTGGTATTCATAAGTGGGAATTCTATAAT
TTAGCCTATTTTAATCCcttttctctgtttttttttatgtacGAAATAGT
GTCTGATCAACACTATTTCTTCTTTGTTAAAGATGAGGGGTGGCTCGCGG
GCGCCAGAGAGTGCTTACTCTTGGTACCACACCTGACTCTAGGCTTTGTC
TTCATcttgcc
Run BLAST on NCBI

transcript from alignment at sc0001951:13720..14530

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038871 ID=TCONS_00038871|Name=TCONS_00038871|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0001951:13720..14530 (Clytia hemisphaerica)
ggcaagATGAAGACAAAGCCTAGAGTCAGGTGTGGTACCAAGAGTAAGCA
CTCTCTGGCGCCCGCGAGCCACCCCTCATCTTTAACAAAGAAGAAATAGT
GTTGATCAGACACTATTTCgtacataaaaaaaaacagagaaaagGGATTA
AAATAGGCTAAATTATAGAATTCCCACTTATGAATACCACATTAAAGAAG
GTTACCTTCTTAACCAACGTTTCATAACCAACAAAACATTcctgccgcca
ttttgaaatttctcttaactttttgaaccTTCGTAACCTACAACCTACTT
CTTAAATAGACGTCACACTGCGCAGGAGCGAGCAGAAAAAAACTCTTGCA
GTTGGCGTTTCGaaaattgtgacgtcacttatTTAAAAGAAACCCTTGAA
ATGCTAAAACGGCTCtttctaaaaaatgacgtcaatttcagAAAAGAAGC
TATTGACATGTTTAACGGTTTAACTCATATTCTAAATATGGATATTTTAG
AAGCCACTGTAAAGCTCAACGGTCACGGTGAGGACTTTCTAGTGCTCAAC
tttaaaaacgcaaaaaaacgGCCATTCATTCATTTAACAAAAGGCACGAG
ACAACAAGGAGGGCTCCACAAGAAATGGCATCAAAAAGAAGAGCAATAGA
TTCTGTGGAAGATGATGGTTGGGCTGAATTGTACACCAGACTGATCAACT
CTGCCGACGATGGGGGCAACAACGGAGCGGGCGAAGTGACGGTAAATTTG
ATTAACAACAAAGCAGcaaatttcctaaaattatATGCAAATAAACATGG
GTTTAATGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023347XLOC_023347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038871-exon-sc0001951-1491911889:13720..14530TCONS_00038871-exon-sc0001951-1491911889:13720..14530Clytia hemisphaericaexon
TCONS_00038871-exon-sc0001951-1510915933:13720..14530TCONS_00038871-exon-sc0001951-1510915933:13720..14530Clytia hemisphaericaexon
TCONS_00038871-exon-sc0001951-1575043694:13720..14530TCONS_00038871-exon-sc0001951-1575043694:13720..14530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001951supercontigsc0001951:13720..14530 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0589331	0.114938	0.333636	0.712028	1.24546	0.628019	0.497221	0.909557	0.446956	0.676656	0.179121	1.05814	0.260541	0.447743	0.167321	0.314948	0.202184	0.175224	0.563825	0	0.320976	0.250135	0.0913878	0.10527	1.66693	0.958205	0.120212	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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