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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038870 ID=TCONS_00038870|Name=TCONS_00038870|organism=Clytia hemisphaerica|type=transcript|length=1210bp
CTCAGCTTCATCGATCCGCGAAACATTCCAGCGTGCCAATCCCTCAATAA
GGTACGCCTGAAAATTGATAGCGTTGGCTCTTCTCCCTGGGATGAACTGA
TGCAGGTGACGATGAAATGACTCTAATGAAGTACTTCCCCTGGCACAACG
GTACTAGGTAAATCCATCTTTCCCTTCTTGCTTGTACCAATTTGAGTGTA
CAAAGAAATATTTGGGGGTTTTTAAATGCATAGTATGTGAAATTTTTGCT
CATTATAAATGGTTGCAATTTCATCCTTCAAAAGTGGAACACCCAAACTG
TCAGTGACACCTGTGTAAGCCAAGATAAGATCTTCAATGCTTTTCGTGGT
GGCTTCTACTCCTCTGGTCTTCACAAGTAATGGCTTTTTTCAACTGCATC
ATCAGAGGCGTAAGGAACCCCAGATAACCGAAGCTCCTCTCTTTTGGCTG
TCATCAATTGGGTGTAATCGATTTCAACCCATTAAAAAATACAAGCAGAG
AGTTGGCCAAGAAAACATTTATAAAGCGGAAGACTCTCTGAAGTACACCC
TTCGCCTAACCTTCTCATAAAATGATAGATGTCAAGACGCACTGACATCT
CCTCCCATTCTGAAAAAAGAGGGTGAAAACGTGTTTCATCGTCATTACTA
CAGCAACCCTGTCAGTGTAAAGCAACTTTGGATGTGGTATATTAGCATCA
TCATATCTCCTCATTAACCCATTGGCCATTTCTTGTAAACCATAATTTGA
TTCTGTTGATGTAAGGACAGACTGCAAGACACCGCCATACTCATTAGACA
CATTGGTGACCCAAGTAGCTGTTCCTCTTGCTTCTCCCGCCAACTTTTTC
AAAATTTTCTTCGTTGAATCAATCTTTAAGATGTCCCCAAACACAGATGT
GATTTGTGCCTTTGAAGCATCATCTCTTGACCAAACATCTCGAACATAAG
CTGCCATAAACCATTGGGGATGTTGGAACAGTTGTTAACACTGGACATTC
TTCAAAACGACAATTCTTTGGTCAGCTGAgggaaaaaactaatttttact
TTGAATTCCTCACAAGCAGCAAGATAACCCATACTTCTGCACATCCACTC
TTTGCTATGCATTTCCAACAAAGTGTTTTAAAGTGCACGCGCACTATTCC
CTAAAGTTCTGGACTTTAACAGAGAAATGACGTTTTTGTCAGTTGCATAT
TGATAAGTTA Run BLAST on NCBI protein sequence of TCONS_00038870-protein >TCONS_00038870-protein ID=TCONS_00038870-protein|Name=TCONS_00038870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MAAYVRDVWSRDDASKAQITSVFGDILKIDSTKKILKKLAGEARGTATWV
TNVSNEYGGVLQSVLTSTESNYGLQEMANGLMRRYDDANIPHPKLLYTDR
VAVVMTMKHVFTLFFQNGRRCQCVLTSIIL Run BLAST on NCBI transcript from alignment at sc0001951:11724..12933 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038870 ID=TCONS_00038870|Name=TCONS_00038870|organism=Clytia hemisphaerica|type=transcript|length=1210bp|location=Sequence derived from alignment at sc0001951:11724..12933 (Clytia hemisphaerica)
TAACTTATCAATATGCAACTGACAAAAACGTCATTTCTCTGTTAAAGTCC
AGAACTTTAGGGAATAGTGCGCGTGCACTTTAAAACACTTTGTTGGAAAT
GCATAGCAAAGAGTGGATGTGCAGAAGTATGGGTTATCTTGCTGCTTGTG
AGGAATTCAAagtaaaaattagttttttcccTCAGCTGACCAAAGAATTG
TCGTTTTGAAGAATGTCCAGTGTTAACAACTGTTCCAACATCCCCAATGG
TTTATGGCAGCTTATGTTCGAGATGTTTGGTCAAGAGATGATGCTTCAAA
GGCACAAATCACATCTGTGTTTGGGGACATCTTAAAGATTGATTCAACGA
AGAAAATTTTGAAAAAGTTGGCGGGAGAAGCAAGAGGAACAGCTACTTGG
GTCACCAATGTGTCTAATGAGTATGGCGGTGTCTTGCAGTCTGTCCTTAC
ATCAACAGAATCAAATTATGGTTTACAAGAAATGGCCAATGGGTTAATGA
GGAGATATGATGATGCTAATATACCACATCCAAAGTTGCTTTACACTGAC
AGGGTTGCTGTAGTAATGACGATGAAACACGTTTTCACCCTCTTTTTTCA
GAATGGGAGGAGATGTCAGTGCGTCTTGACATCTATCATTTTATGAGAAG
GTTAGGCGAAGGGTGTACTTCAGAGAGTCTTCCGCTTTATAAATGTTTTC
TTGGCCAACTCTCTGCTTGTATTTTTTAATGGGTTGAAATCGATTACACC
CAATTGATGACAGCCAAAAGAGAGGAGCTTCGGTTATCTGGGGTTCCTTA
CGCCTCTGATGATGCAGTTGAAAAAAGCCATTACTTGTGAAGACCAGAGG
AGTAGAAGCCACCACGAAAAGCATTGAAGATCTTATCTTGGCTTACACAG
GTGTCACTGACAGTTTGGGTGTTCCACTTTTGAAGGATGAAATTGCAACC
ATTTATAATGAGCAAAAATTTCACATACTATGCATTTAAAAACCCCCAAA
TATTTCTTTGTACACTCAAATTGGTACAAGCAAGAAGGGAAAGATGGATT
TACCTAGTACCGTTGTGCCAGGGGAAGTACTTCATTAGAGTCATTTCATC
GTCACCTGCATCAGTTCATCCCAGGGAGAAGAGCCAACGCTATCAATTTT
CAGGCGTACCTTATTGAGGGATTGGCACGCTGGAATGTTTCGCGGATCGA
TGAAGCTGAG Coding sequence (CDS) from alignment at sc0001951:11724..12933 >TCONS_00038870 ID=TCONS_00038870|Name=TCONS_00038870|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0001951:11724..12933 (Clytia hemisphaerica)
ATGGCAGCTTATGTTCGAGATGTTTGGTCAAGAGATGATGCTTCAAAGGC
ACAAATCACATCTGTGTTTGGGGACATCTTAAAGATTGATTCAACGAAGA
AAATTTTGAAAAAGTTGGCGGGAGAAGCAAGAGGAACAGCTACTTGGGTC
ACCAATGTGTCTAATGAGTATGGCGGTGTCTTGCAGTCTGTCCTTACATC
AACAGAATCAAATTATGGTTTACAAGAAATGGCCAATGGGTTAATGAGGA
GATATGATGATGCTAATATACCACATCCAAAGTTGCTTTACACTGACAGG
GTTGCTGTAGTAATGACGATGAAACACGTTTTCACCCTCTTTTTTCAGAA
TGGGAGGAGATGTCAGTGCGTCTTGACATCTATCATTTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038870-exon-sc0001951-1491911889:11724..12933 | TCONS_00038870-exon-sc0001951-1491911889:11724..12933 | Clytia hemisphaerica | exon |
| TCONS_00038870-exon-sc0001951-1510915933:11724..12933 | TCONS_00038870-exon-sc0001951-1510915933:11724..12933 | Clytia hemisphaerica | exon |
| TCONS_00038870-exon-sc0001951-1575043694:11724..12933 | TCONS_00038870-exon-sc0001951-1575043694:11724..12933 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001951 | supercontig | sc0001951:11724..12933 . |
Blast
The following BLAST results are available for this feature:
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