TCONS_00038869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038869
Unique NameTCONS_00038869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038869 ID=TCONS_00038869|Name=TCONS_00038869|organism=Clytia hemisphaerica|type=transcript|length=298bp
TGCCGTACCACGGGTTTAGTGAGGACTACCAACCAGACGGGATGCACACA
GTTAAGCGTGTTATCCCAGCAAAAACCAAATAAGTTTCCTCTGGAAAACT
TAAAAAGGGCTGAGGAACAAAATCACACCAATGTTGATTATGATGAGGAC
ATAACCTACACTTTAACGGCTGAGGATATCAAGTTGGCAAACGAACGCAT
CCGTAAAGTGATCTTCACTCCAGATTGTACTGGATTCAAGGGTGATGTTT
TTACCAAAACATGTGATGTTTTAAAGAATCATCATGGATGGCAAGAGG
Run BLAST on NCBI

protein sequence of TCONS_00038869-protein

>TCONS_00038869-protein ID=TCONS_00038869-protein|Name=TCONS_00038869-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
CRTTGLVRTTNQTGCTQLSVLSQQKPNKFPLENLKRAEEQNHTNVDYDED
ITYTLTAEDIKLANERIRKVIFTPDCTGFKGDVFTKTCDVLKNHHGWQE
Run BLAST on NCBI

transcript from alignment at sc0001951:3426..3723

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038869 ID=TCONS_00038869|Name=TCONS_00038869|organism=Clytia hemisphaerica|type=transcript|length=298bp|location=Sequence derived from alignment at sc0001951:3426..3723 (Clytia hemisphaerica)
CCTCTTGCCATCCATGATGATTCTTTAAAACATCACATGTTTTGGTAAAA
ACATCACCCTTGAATCCAGTACAATCTGGAGTGAAGATCACTTTACGGAT
GCGTTCGTTTGCCAACTTGATATCCTCAGCCGTTAAAGTGTAGGTTATGT
CCTCATCATAATCAACATTGGTGTGATTTTGTTCCTCAGCCCTTTTTAAG
TTTTCCAGAGGAAACTTATTTGGTTTTTGCTGGGATAACACGCTTAACTG
TGTGCATCCCGTCTGGTTGGTAGTCCTCACTAAACCCGTGGTACGGCA

Coding sequence (CDS) from alignment at sc0001951:3426..3723

>TCONS_00038869 ID=TCONS_00038869|Name=TCONS_00038869|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at sc0001951:3426..3723 (Clytia hemisphaerica)
CTCTTGCCATCCATGATGATTCTTTAAAACATCACATGTTTTGGTAAAAA
CATCACCCTTGAATCCAGTACAATCTGGAGTGAAGATCACTTTACGGATG
CGTTCGTTTGCCAACTTGATATCCTCAGCCGTTAAAGTGTAGGTTATGTC
CTCATCATAATCAACATTGGTGTGATTTTGTTCCTCAGCCCTTTTTAAGT
TTTCCAGAGGAAACTTATTTGGTTTTTGCTGGGATAACACGCTTAACTGT
GTGCATCCCGTCTGGTTGGTAGTCCTCACTAAACCCGTGGTACGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023345XLOC_023345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038869-exon-sc0001951-1491911889:3426..3723TCONS_00038869-exon-sc0001951-1491911889:3426..3723Clytia hemisphaericaexon
TCONS_00038869-exon-sc0001951-1510915933:3426..3723TCONS_00038869-exon-sc0001951-1510915933:3426..3723Clytia hemisphaericaexon
TCONS_00038869-exon-sc0001951-1575043694:3426..3723TCONS_00038869-exon-sc0001951-1575043694:3426..3723Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038869-proteinTCONS_00038869-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001951supercontigsc0001951:3426..3723 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98968	0.618387	0	0	0	0	0	0	0	0.415364	0	0.530046	0	0	0.451922	0.242491	0	0.612375	0	0	0	0	0	0	0	0.381307	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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