TCONS_00038868 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038868
Unique NameTCONS_00038868
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1775

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038868 ID=TCONS_00038868|Name=TCONS_00038868|organism=Clytia hemisphaerica|type=transcript|length=1775bp
ATATTGAAGTCAAATACCCGTTTTTTTTCAAGACGGGGTACTACCATTGT
AAACCGACGAGGTTGTGCCGATGTAGTTAAAAAAACGTATCCTGCGCCGG
ACTATAAAGTTGCAAAAAAGGGACTCTGAATGTGACTGAAAATGGCAAAA
GTTTTTACTTACTTTTTCCCAATAAGGTCTACCTTACTACAATGAAAAAA
AATTATTTTCCTTTGAAAATACACAAATCCCCGAGCCTGATCTTTGAACT
CTTTAAACCTTGAATGTGACTTTAGGAGAAAAGCGGCATCCCGAAAGGGA
CTCTAGGGTAAAAAAGGTACCCTGTCTAGCGGCACATTCCCATAACCGAT
TTCTCTAAATACTCCCTCCCTGGGTTATGGCTATTCAAAAAATCTTCCCA
CCAGTACAGGACTTATCTAAAGTTTTGTCTGGTTTGTAGAGAGTATACTA
GGACTAAAACGAGTGATTCTTAACATAGATAATATTAACATGGATGAATT
TGTATCTTTAGATCTGCAGCCATGCTACTGCGATTACGCTGGTTGTACTG
GAAGGCTTTTGACAAAACGAACTTTAAGAAGACACAGTGAGGAAGACGCA
AAGCTGCTCATTGATTCAAAAAGACGAGCATTAGAAAACACCACTGAATA
CTCACGAAAAATTCAATACGATGAATCCCTCTACAAAACAAGCACAGTTG
CTACAACACCAATGTACACTGGATCGAAAAGAAGTGTACTTGAAGCTCTT
TTTGTCAAGATTAGAACCTTCGTTTCTCATCCGTTTTCCTCAAAGGAACA
GCTAGATGAAGAATTACGAAACGATAAAGAGCTTTTTCTACCACAACCAA
ACAACATGCCTGGTTCGTTTATGGAAGCTCGTTCTCTTTTGAAACCATTT
CTTGTGCCCTTAGAGAAGTATGATGTATGTGTCAATGACTGTGTCATATT
TCGGAACGAGTACAGCTTCTCTCAAGAATGCCCTGTTTGTGAAGAGAAAA
GGTACGAGGATGGAAAACCAAGAAGAACATTCACATACTTTCCACTTGGA
CCAAGACTGGCAAGAATCGCTGGATCTAACATCCTGGAAAAGCCGGAAGA
ATGTCGCGGGGCAGACGATGAATGGATTAAAGACATTCATGATACCATCA
AGTGGAAAGAATGGCATTCTCAAGATGGCATGCTCCATGGAAAGATTGGT
ATTGCTACTTCATTTTGCACTGATGGCGTAAACCCTTTGAAGTCAAATAA
CCGTAGCTATTCAATGTGGCCACTTATGCTTCAAATCTTAAACTGGCCAC
CaaagttcagaaagtctttTGCTGGTATTCAGCTCCTTGGTATCGCACCA
GGGAATggaacaaaggaaccaaaaaacTTAGAGCCTTATCTGTAGGTGTT
TGTTGACGAGATGAAAGAGCTTGCCGAGTGTTCCATGTATATAATCGAGA
ATGGAAAGAAATGAAAGTCAAGCTGCTACAGTACGTGTTTGATTTCCCGG
CTATCGCAAAAGTCATGCACACACAAGGTCAAGGTGGCATTAGTGCATGC
CCTTGGTGCCAAAACAAAGGACAACGCGTGTGCAACAAGACGATCTATCC
CGGATCACGCAAATTCCTCGAACAAGATCACCCACTGAGAACGTCTACTC
TTTACTCTGATGGTAACGAAACAGCTGAACGGCCAGCAGCTCATACGAGG
GAAAGCCAAGTCGTATTAAGAAAGCAATACGATGAAAACCTAACAAGAGT
CAAAAGGAAAAATTTGCTAAAGAAC
Run BLAST on NCBI

protein sequence of TCONS_00038868-protein

>TCONS_00038868-protein ID=TCONS_00038868-protein|Name=TCONS_00038868-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MDEFVSLDLQPCYCDYAGCTGRLLTKRTLRRHSEEDAKLLIDSKRRALEN
TTEYSRKIQYDESLYKTSTVATTPMYTGSKRSVLEALFVKIRTFVSHPFS
SKEQLDEELRNDKELFLPQPNNMPGSFMEARSLLKPFLVPLEKYDVCVND
CVIFRNEYSFSQECPVCEEKRYEDGKPRRTFTYFPLGPRLARIAGSNILE
KPEECRGADDEWIKDIHDTIKWKEWHSQDGMLHGKIGIATSFCTDGVNPL
KSNNRSYSMWPLMLQILNWPPKFRKSFAGIQLLGIAPGNGTKEPKNLEPY
L
Run BLAST on NCBI

transcript from alignment at sc0001951:4002..6606-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038868 ID=TCONS_00038868|Name=TCONS_00038868|organism=Clytia hemisphaerica|type=transcript|length=2605bp|location=Sequence derived from alignment at sc0001951:4002..6606- (Clytia hemisphaerica)
ATATTGAAGTCAAATACCCGTTTTTTTTCAAGACGGGGTACTACCATTGT
AAACCGACGAGGTTGTGCCGATGTAGTTAAAAAAACGTATCCTGCGCCGG
ACTATAAAGTTGCAAAAAAGGGACTCTGAATGTGACTGAAAATGGCAAAA
GTTTTTACTTACTTTTTCCCAATAAGGTCTACCTTACTACAATGAAAAAA
AATTATTTTCCTTTGAAAATACACAAATCCCCGAGCCTGATCTTTGAACT
CTTTAAACCTTGAATGTGACTTTAGGAGAAAAGCGGCATCCCGAAAGGGA
CTCTAGGGTAAAAAAGGTACCCTGTCTAGCGGCACATTCCCATAACCGAT
TTCTCTAAATACTCCCTCCCTGGGTTATGGCTATTCAAAAAATCTTCCCA
CCAGTACAGGACTTATCTAAAGTTTTGTCTGGTTTGTAGAGAGTATACTA
GGACTAAAACGAGTGATTCTTAACATAGATAATATTAACATGGATGAATT
TGTATCTTTAGATCTGCAGCCATGCTACTGCGATTACGCTGGTTGTACTG
GAAGGCTTTTGACAAAACGAACTTTAAGAAGACACAGTGAGGAAGACGCA
AAGCTGCTCATTGATTCAAAAAGACGAGCATTAGAAAACACCACTGAATA
CTCACGAAAAATTCAATACGATGAATCCCTCTACAAAACAAGCACAGTTG
CTACAACACCAATGTACACTGGATCGAAAAGAAGTGTACTTGAAGCTCTT
TTTGTCAAGATTAGAACCTTCGTTTCTCATCCGTTTTCCTCAAAGGAACA
GCTAGATGAAGAATTACGAAACGATAAAGAGCTTTTTCTACCACAACCAA
ACAACATGCCTGGTTCGTTTATGGAAGCTCGTTCTCTTTTGAAACCATTT
CTTGTGCCCTTAGAGAAGTATGATGTATGTGTCAATGACTGTGTCATATT
TCGGAACGAGTACAGCTTCTCTCAAGAATGCCCTGTTTGTGAAGAGAAAA
GGTACGAGGATGGAAAACCAAGAAGAACATTCACATACTTTCCACTTGGA
CCAAGACTGGCAAGAATCGCTGGATCTAACATCCTGGAAAAGCCGGAAGA
ATGTCGCGGGGCAGACGATGAATGGATTAAAGACATTCATGATACCATCA
AGTGGAAAGAATGGCATTCTCAAGATGGCATGCTCCATGGAAAGATTGGT
AAGGAATAATTGATTTATAAGTCCTTAGAATAAAATTTCAGAATAAACAG
GAAAAAAAAAATTCTAAAATTGTTTTCGTATTCCTGTATTTAAAAGAACT
TAGTATGAAAGATAGTAAAACGTATTTCAAAAGCAAATAGGATCCATAAT
TCATGTGAGTTACTTTTGTGAGTTATTATATCCATGAGCTATGTGTTGTG
ACGTCAATCCGCGAGTGATTTTAAATAATAACTCACNTCAAAAGCAAATA
GGATCCATAATTCATGTGAGTTACTTTTGTGAGTTATTATATCCATGAGC
TATGTGTTGTGACGTCAATCCGCGAGTGATTTTAAATAATAACTCACAAA
AATTTAATTTTGTGAGTAAATAACTCATTTTTATATATAAAAAACCACGA
GTTGAAAATATGAAATACAGCATTTATCTACACGCTTTTAGCAAATCAGA
TTGCTTATATTTTTTAAGGTTTTCCCTGTGGATGAATTTTATACAGAAAA
AAAAACAAATCAATTTGGATTTCTATAAGATTTATGCTGATGGTTGCATT
CTTTATTCTTATTAAAAACGTGTAGTGTATTAAGAAAAAATACGATTTGT
TTTCTAGGTATTGCTACTTCATTTTGCACTGATGGCGTAAACCCTTTGAA
GTCAAATAACCGTAGCTATTCAATGTGGCCACTTATGCTTCAAATCTTAA
ACTGGCCACCAAAGTTCAGAAAGTCTTTTGCTGGTATTCAGCTCCTTGGT
ATCGCACCAGGGAATGGAACAAAGGAACCAAAAAACTTAGAGCCTTATCT
GTAGGTGTTTGTTGACGAGATGAAAGAGCTTGCCGAGTGTTCCATGTATA
TAATCGAGAATGGAAAGAAATGAAAGTCAAGCTGCTACAGTACGTGTTTG
ATTTCCCGGCTATCGCAAAAGTCATGCACACACAAGGTCAAGGTATGATA
TACTATAATAAAGTTGATAAAAAACCGGAGTTGAACAACTTCTGGGTAAT
TGGTCCTTTAAATCAAAAGGAACCCTAGCACTACGGTGTAACAATTTCTA
GATCGTCAGTTTGCTCAGAAAATTTTATGTATATGTACGTACTACCGACA
TTTATAATTATCGCATATCAATTTACAATAAAATACAATTGAACATTTCA
AATAAACTTTTAGGTGGCATTAGTGCATGCCCTTGGTGCCAAAACAAAGG
ACAACGCGTGTGCAACAAGACGATCTATCCCGGATCACGCAAATTCCTCG
AACAAGATCACCCACTGAGAACGTCTACTCTTTACTCTGATGGTAACGAA
ACAGCTGAACGGCCAGCAGCTCATACGAGGGAAAGCCAAGTCGTATTAAG
AAAGCAATACGATGAAAACCTAACAAGAGTCAAAAGGAAAAATTTGCTAA
AGAAC

Coding sequence (CDS) from alignment at sc0001951:4002..6606-

>TCONS_00038868 ID=TCONS_00038868|Name=TCONS_00038868|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0001951:4002..6606- (Clytia hemisphaerica)
GTATTGCTACTTCATTTTGCACTGATGGCGTAAACCCTTTGAAGTCAAAT
AACCGTAGCTATTCAATGTGGCCACTTATGCTTCAAATCTTAAACTGGCC
ACCAAAGTTCAGAAAGTCTTTTGCTGGTATTCAGCTCCTTGGTATCGCAC
CAGGGAATGGAACAAAGGAACCAAAAAACTTAGAGCCTTATCTGTAGATG
GATGAATTTGTATCTTTAGATCTGCAGCCATGCTACTGCGATTACGCTGG
TTGTACTGGAAGGCTTTTGACAAAACGAACTTTAAGAAGACACAGTGAGG
AAGACGCAAAGCTGCTCATTGATTCAAAAAGACGAGCATTAGAAAACACC
ACTGAATACTCACGAAAAATTCAATACGATGAATCCCTCTACAAAACAAG
CACAGTTGCTACAACACCAATGTACACTGGATCGAAAAGAAGTGTACTTG
AAGCTCTTTTTGTCAAGATTAGAACCTTCGTTTCTCATCCGTTTTCCTCA
AAGGAACAGCTAGATGAAGAATTACGAAACGATAAAGAGCTTTTTCTACC
ACAACCAAACAACATGCCTGGTTCGTTTATGGAAGCTCGTTCTCTTTTGA
AACCATTTCTTGTGCCCTTAGAGAAGTATGATGTATGTGTCAATGACTGT
GTCATATTTCGGAACGAGTACAGCTTCTCTCAAGAATGCCCTGTTTGTGA
AGAGAAAAGGTACGAGGATGGAAAACCAAGAAGAACATTCACATACTTTC
CACTTGGACCAAGACTGGCAAGAATCGCTGGATCTAACATCCTGGAAAAG
CCGGAAGAATGTCGCGGGGCAGACGATGAATGGATTAAAGACATTCATGA
TACCATCAAGTGGAAAGAATGGCATTCTCAAGATGGCATGCTCCATGGAA
AGATTGGTATTGCTACTTCATTTTGCACTGATGGCGTAAACCCTTTGAAG
TCAAATAACCGTAGCTATTCAATGTGGCCACTTATGCTTCAAATCTTAAA
CTGGCCACCAAAGTTCAGAAAGTCTTTTGCTGGTATTCAGCTCCTTGGTA
TCGCACCAGGGAATGGAACAAAGGAACCAAAAAACTTAGAGCCTTATCTG
TAGATGGATGAATTTGTATCTTTAGATCTGCAGCCATGCTACTGCGATTA
CGCTGGTTGTACTGGAAGGCTTTTGACAAAACGAACTTTAAGAAGACACA
GTGAGGAAGACGCAAAGCTGCTCATTGATTCAAAAAGACGAGCATTAGAA
AACACCACTGAATACTCACGAAAAATTCAATACGATGAATCCCTCTACAA
AACAAGCACAGTTGCTACAACACCAATGTACACTGGATCGAAAAGAAGTG
TACTTGAAGCTCTTTTTGTCAAGATTAGAACCTTCGTTTCTCATCCGTTT
TCCTCAAAGGAACAGCTAGATGAAGAATTACGAAACGATAAAGAGCTTTT
TCTACCACAACCAAACAACATGCCTGGTTCGTTTATGGAAGCTCGTTCTC
TTTTGAAACCATTTCTTGTGCCCTTAGAGAAGTATGATGTATGTGTCAAT
GACTGTGTCATATTTCGGAACGAGTACAGCTTCTCTCAAGAATGCCCTGT
TTGTGAAGAGAAAAGGTACGAGGATGGAAAACCAAGAAGAACATTCACAT
ACTTTCCACTTGGACCAAGACTGGCAAGAATCGCTGGATCTAACATCCTG
GAAAAGCCGGAAGAATGTCGCGGGGCAGACGATGAATGGATTAAAGACAT
TCATGATACCATCAAGTGGAAAGAATGGCATTCTCAAGATGGCATGCTCC
ATGGAAAGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023344XLOC_023344Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038868-proteinTCONS_00038868-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038868-exon-sc0001951-1575043694:5409..6606TCONS_00038868-exon-sc0001951-1575043694:5409..6606Clytia hemisphaericaexon
TCONS_00038868-exon-sc0001951-1575043694:4465..4799TCONS_00038868-exon-sc0001951-1575043694:4465..4799Clytia hemisphaericaexon
TCONS_00038868-exon-sc0001951-1575043694:4002..4243TCONS_00038868-exon-sc0001951-1575043694:4002..4243Clytia hemisphaericaexon
TCONS_00038868-exon-sc0001951-1510915933:5409..6606TCONS_00038868-exon-sc0001951-1510915933:5409..6606Clytia hemisphaericaexon
TCONS_00038868-exon-sc0001951-1510915933:4465..4799TCONS_00038868-exon-sc0001951-1510915933:4465..4799Clytia hemisphaericaexon
TCONS_00038868-exon-sc0001951-1510915933:4002..4243TCONS_00038868-exon-sc0001951-1510915933:4002..4243Clytia hemisphaericaexon
TCONS_00038868-exon-sc0001951-1491911889:5409..6606TCONS_00038868-exon-sc0001951-1491911889:5409..6606Clytia hemisphaericaexon
TCONS_00038868-exon-sc0001951-1491911889:4465..4799TCONS_00038868-exon-sc0001951-1491911889:4465..4799Clytia hemisphaericaexon
TCONS_00038868-exon-sc0001951-1491911889:4002..4243TCONS_00038868-exon-sc0001951-1491911889:4002..4243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001951supercontigsc0001951:4002..6606 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.31717	0.243014	0.153907	0.075287	0.0305515	0.0482845	0	0.0545359	0.0381819	0.118236	0.114763	0.0301762	0.0602685	0.0312947	0.0900498	0.0690266	0.0850351	0.0174317	0	0	0	0	0.0779274	0.0708473	0.072971	0.0434166	0	0.0331529	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004242Transposase_21
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038868 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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