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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038863 ID=TCONS_00038863|Name=TCONS_00038863|organism=Clytia hemisphaerica|type=transcript|length=1663bp
AAGATGTTACATGTTCACTCATCGTTGGAAAATCGAGACTCTCGCCAATC
AAAGGAAACACCATTCCAAGACTAGAACTTCAAGCTGCAGTTCTTGCCTC
AAGGATGAAACACTGTATCAACAGTGAGATGAGACTTCCAATCGACAAAT
CATTCTTGTGGTCAGACTCAATGGTGGTACTATCATACATACGTAATGAA
GAGAAGAGGTTCTCAACCTACGTGATGAACAGGACAAACGAGATCCGAGA
AAAGACAAATGTTCAAGATTGGAATTTCGTACCTGGAAAGTTGAATCCTG
CCGATCTTGGGACAAGACCAATCACAGAAAAACCAGAAGACAAGCCAATT
GACAAGTGGGTCAATGGTCCTGATTTTTTGAGACATCCTGATCTAATCAA
ATTCGAAGAGGAGGCAAAAGTTGACCCCCTACCAGAAGAAATCACGAAAG
AGGCATCGACAGCTAGCATCCAGAGATTAGAGGATCAAATGACGGATGTC
ATCAGATGGGAGAAGTTTTCAGAATGGGACAAAATCAAACGAGCTCACGC
ATGGATCATGAAACTGAAAAGGAGATGGGTAGAATTCAAACGACACGGTA
GCTCGGAGACAGATATGTCAATTCTGACCGCCAATGATCTTCAAAGAGCC
AGCCGAGAACTATGCAGAATTTCTCAAGAAGAATCCAGAGCAAGTTTGTC
NATCCGAAGTGACAACGGGACTAATTTTGTGGGGGCAGAGAGAGAATTAA
GGGAGGCACTCGAGAAATTAGACCAGAAAAGGATTACTAATGAACTTTCA
GCAAACAACATCGAATGGAAGTTCAACCCACCCGTCGCACCATGGATGGG
CGGTGCCATGGAGTCCATGGTCAAGCTGACAAAAAGAGCACTGAGGGCAA
CGGTGGGTGACAGAATGTTTAATGAGGAGGCTTTACACACCTTATTACTT
GAGGTAGAGTCAACCCTAAATTCCCGACCAATTACACCTGTCAGTGACGA
CACAAACGATTATGAAGCCCTGACTCCAAATCACTTTCTTCTTGGTCGAT
CTGCACCAAATTATCCAATCATGAGCGAGGCATCCGGACTAAGGAGCAAA
TGGAAGCAAGTCCAAAGGGCACTCGCAACGTTTTGGTCAAGATGGGTGAA
AGAATACCTGCCCTCGCTTAATGAACGGTCAAAATGGACGAGCGAAACGA
GAAACATGAAGCCAGGAGACCTTGTGGTCATCAAGGACACCTCAATCGCC
AGATACAAGTGGCCGCTGGCACGAATCCAAAGCGTAATTCCATCAGATGA
CGGCAGAACGCGAGTGGCAATCGTCAGGACGAAGGACGGGAGCACTTTCA
AACGAGCCGTTGGGAGGTTAGGATTACTGGAAGCTGTCCAGTGATCGTTG
TCTTCGATGAAATGGTCTTAACGAGCGTGGTTCGAAATCCAGCTTGGTTG
TAATTATGGTATTGTTGTGTTAAATTCTACTAAATGAACTTTGATATGAG
TTAATCGCATTGGTAACTCAAAGAACTTTTACATGAAACGCAGTCTGCGT
TTGTATGATTTGTTGGTCAAATGGCAAATGCTTGTTGGATGCACTGGTTG
TTTGGAGAGACGCAATCTCTGTTGGGTGGAGTGTTTTGGTTAAAACTCCC
AAGTGCATAACGT Run BLAST on NCBI protein sequence of TCONS_00038863-protein >TCONS_00038863-protein ID=TCONS_00038863-protein|Name=TCONS_00038863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
DVTCSLIVGKSRLSPIKGNTIPRLELQAAVLASRMKHCINSEMRLPIDKS
FLWSDSMVVLSYIRNEEKRFSTYVMNRTNEIREKTNVQDWNFVPGKLNPA
DLGTRPITEKPEDKPIDKWVNGPDFLRHPDLIKFEEEAKVDPLPEEITKE
ASTASIQRLEDQMTDVIRWEKFSEWDKIKRAHAWIMKLKRRWVEFKRHGS
SETDMSILTANDLQRASRELCRISQEESRASLXIRSDNGTNFVGAERELR
EALEKLDQKRITNELSANNIEWKFNPPVAPWMGGAMESMVKLTKRALRAT
VGDRMFNEEALHTLLLEVESTLNSRPITPVSDDTNDYEALTPNHFLLGRS
APNYPIMSEASGLRSKWKQVQRALATFWSRWVKEYLPSLNERSKWTSETR
NMKPGDLVVIKDTSIARYKWPLARIQSVIPSDDGRTRVAIVRTKDGSTFK
RAVGRLGLLEAVQ Run BLAST on NCBI transcript from alignment at sc0001949:32858..34520 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038863 ID=TCONS_00038863|Name=TCONS_00038863|organism=Clytia hemisphaerica|type=transcript|length=1663bp|location=Sequence derived from alignment at sc0001949:32858..34520 (Clytia hemisphaerica)
ACGTTATGCACTTGGGAGTTTTAACCAAAACACTCCACCCAACAGAGATT
GCGTCTCTCCAAACAACCAGTGCATCCAACAAGCATTTGCCATTTGACCA
ACAAATCATACAAACGCAGACTGCGTTTCATGTAAAAGTTCTTTGAGTTA
CCAATGCGATTAACTCATATCAAAGTTCATTTAGTAGAATTTAACACAAC
AATACCATAATTACAACCAAGCTGGATTTCGAACCACGCTCGTTAAGACC
ATTTCATCGAAGACAACGATCACTGGACAGCTTCCAGTAATCCTAACCTC
CCAACGGCTCGTTTGAAAGTGCTCCCGTCCTTCGTCCTGACGATTGCCAC
TCGCGTTCTGCCGTCATCTGATGGAATTACGCTTTGGATTCGTGCCAGCG
GCCACTTGTATCTGGCGATTGAGGTGTCCTTGATGACCACAAGGTCTCCT
GGCTTCATGTTTCTCGTTTCGCTCGTCCATTTTGACCGTTCATTAAGCGA
GGGCAGGTATTCTTTCACCCATCTTGACCAAAACGTTGCGAGTGCCCTTT
GGACTTGCTTCCATTTGCTCCTTAGTCCGGATGCCTCGCTCATGATTGGA
TAATTTGGTGCAGATCGACCAAGAAGAAAGTGATTTGGAGTCAGGGCTTC
ATAATCGTTTGTGTCGTCACTGACAGGTGTAATTGGTCGGGAATTTAGGG
TTGACTCTACCTCAAGTAATAAGGTGTGTAAAGCCTCCTCATTAAACATT
CTGTCACCCACCGTTGCCCTCAGTGCTCTTTTTGTCAGCTTGACCATGGA
CTCCATGGCACCGCCCATCCATGGTGCGACGGGTGGGTTGAACTTCCATT
CGATGTTGTTTGCTGAAAGTTCATTAGTAATCCTTTTCTGGTCTAATTTC
TCGAGTGCCTCCCTTAATTCTCTCTCTGCCCCCACAAAATTAGTCCCGTT
GTCACTTCGGATNGACAAACTTGCTCTGGATTCTTCTTGAGAAATTCTGC
ATAGTTCTCGGCTGGCTCTTTGAAGATCATTGGCGGTCAGAATTGACATA
TCTGTCTCCGAGCTACCGTGTCGTTTGAATTCTACCCATCTCCTTTTCAG
TTTCATGATCCATGCGTGAGCTCGTTTGATTTTGTCCCATTCTGAAAACT
TCTCCCATCTGATGACATCCGTCATTTGATCCTCTAATCTCTGGATGCTA
GCTGTCGATGCCTCTTTCGTGATTTCTTCTGGTAGGGGGTCAACTTTTGC
CTCCTCTTCGAATTTGATTAGATCAGGATGTCTCAAAAAATCAGGACCAT
TGACCCACTTGTCAATTGGCTTGTCTTCTGGTTTTTCTGTGATTGGTCTT
GTCCCAAGATCGGCAGGATTCAACTTTCCAGGTACGAAATTCCAATCTTG
AACATTTGTCTTTTCTCGGATCTCGTTTGTCCTGTTCATCACGTAGGTTG
AGAACCTCTTCTCTTCATTACGTATGTATGATAGTACCACCATTGAGTCT
GACCACAAGAATGATTTGTCGATTGGAAGTCTCATCTCACTGTTGATACA
GTGTTTCATCCTTGAGGCAAGAACTGCAGCTTGAAGTTCTAGTCTTGGAA
TGGTGTTTCCTTTGATTGGCGAGAGTCTCGATTTTCCAACGATGAGTGAA
CATGTAACATCTT Coding sequence (CDS) from alignment at sc0001949:32858..34520 >TCONS_00038863 ID=TCONS_00038863|Name=TCONS_00038863|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0001949:32858..34520 (Clytia hemisphaerica)
TCACTGGACAGCTTCCAGTAATCCTAACCTCCCAACGGCTCGTTTGAAAG
TGCTCCCGTCCTTCGTCCTGACGATTGCCACTCGCGTTCTGCCGTCATCT
GATGGAATTACGCTTTGGATTCGTGCCAGCGGCCACTTGTATCTGGCGAT
TGAGGTGTCCTTGATGACCACAAGGTCTCCTGGCTTCATGTTTCTCGTTT
CGCTCGTCCATTTTGACCGTTCATTAAGCGAGGGCAGGTATTCTTTCACC
CATCTTGACCAAAACGTTGCGAGTGCCCTTTGGACTTGCTTCCATTTGCT
CCTTAGTCCGGATGCCTCGCTCATGATTGGATAATTTGGTGCAGATCGAC
CAAGAAGAAAGTGATTTGGAGTCAGGGCTTCATAATCGTTTGTGTCGTCA
CTGACAGGTGTAATTGGTCGGGAATTTAGGGTTGACTCTACCTCAAGTAA
TAAGGTGTGTAAAGCCTCCTCATTAAACATTCTGTCACCCACCGTTGCCC
TCAGTGCTCTTTTTGTCAGCTTGACCATGGACTCCATGGCACCGCCCATC
CATGGTGCGACGGGTGGGTTGAACTTCCATTCGATGTTGTTTGCTGAAAG
TTCATTAGTAATCCTTTTCTGGTCTAATTTCTCGAGTGCCTCCCTTAATT
CTCTCTCTGCCCCCACAAAATTAGTCCCGTTGTCACTTCGGATNGACAAA
CTTGCTCTGGATTCTTCTTGAGAAATTCTGCATAGTTCTCGGCTGGCTCT
TTGAAGATCATTGGCGGTCAGAATTGACATATCTGTCTCCGAGCTACCGT
GTCGTTTGAATTCTACCCATCTCCTTTTCAGTTTCATGATCCATGCGTGA
GCTCGTTTGATTTTGTCCCATTCTGAAAACTTCTCCCATCTGATGACATC
CGTCATTTGATCCTCTAATCTCTGGATGCTAGCTGTCGATGCCTCTTTCG
TGATTTCTTCTGGTAGGGGGTCAACTTTTGCCTCCTCTTCGAATTTGATT
AGATCAGGATGTCTCAAAAAATCAGGACCATTGACCCACTTGTCAATTGG
CTTGTCTTCTGGTTTTTCTGTGATTGGTCTTGTCCCAAGATCGGCAGGAT
TCAACTTTCCAGGTACGAAATTCCAATCTTGAACATTTGTCTTTTCTCGG
ATCTCGTTTGTCCTGTTCATCACGTAGGTTGAGAACCTCTTCTCTTCATT
ACGTATGTATGATAGTACCACCATTGAGTCTGACCACAAGAATGATTTGT
CGATTGGAAGTCTCATCTCACTGTTGATACAGTGTTTCATCCTTGAGGCA
AGAACTGCAGCTTGAAGTTCTAGTCTTGGAATGGTGTTTCCTTTGATTGG
CGAGAGTCTCGATTTTCCAACGATGAGTGAACATGTAACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038863-exon-sc0001949-1491911889:32858..34520 | TCONS_00038863-exon-sc0001949-1491911889:32858..34520 | Clytia hemisphaerica | exon |
| TCONS_00038863-exon-sc0001949-1510915933:32858..34520 | TCONS_00038863-exon-sc0001949-1510915933:32858..34520 | Clytia hemisphaerica | exon |
| TCONS_00038863-exon-sc0001949-1575043694:32858..34520 | TCONS_00038863-exon-sc0001949-1575043694:32858..34520 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001949 | supercontig | sc0001949:32858..34520 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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