TCONS_00038862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038862
Unique NameTCONS_00038862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038862 ID=TCONS_00038862|Name=TCONS_00038862|organism=Clytia hemisphaerica|type=transcript|length=593bp
GGACAACCTATCACATAAACACgaattaattgataaaaaataaaattgaa
ataaccaATCAACAATCAACAATCCAAACAAGAAATGATGACGCCGTTAA
AACATCAAAAGACATACTCCAAgccaaaattcaatgtttatcaaataaaa
gttcACAGTATCTCGtcaggaaaacaaccaaaacaatcacacaagtttca
aaagtttataaaatcCACAAAACCTCTGCTCTGACCTCGTGAAATAAGAA
CCAAGCATTAACTTCCATTCTTCTCATCAATTCGTCAACTTGGACCAGTT
TCACATCTCAATAGAATGTTAATACCATTTTGCCAATCATTTACAAAGCA
AAGTTATGGGGATGTAGCATTTTCTTCATGTGTCAAGCAAATGTCTCTAA
AATCTTTTGGTTGGTTTGGTATACGTATACGTTCAACAGGTAGAGGGCAA
AGTGATTGTTTGTCCTTCTCTATCTCGTACCCATGTTGGGTTTTTAGCTT
CAACCACTGCACTGTCCCACTGTCGAAAGGTTGTCTGAGTCATCGAAGta
tttttatctttcattttagatttgCTTTTTCTCAATATTTCTA
Run BLAST on NCBI

transcript from alignment at sc0001949:6691..7283

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038862 ID=TCONS_00038862|Name=TCONS_00038862|organism=Clytia hemisphaerica|type=transcript|length=593bp|location=Sequence derived from alignment at sc0001949:6691..7283 (Clytia hemisphaerica)
TAGAAATATTGAGAAAAAGcaaatctaaaatgaaagataaaaataCTTCG
ATGACTCAGACAACCTTTCGACAGTGGGACAGTGCAGTGGTTGAAGCTAA
AAACCCAACATGGGTACGAGATAGAGAAGGACAAACAATCACTTTGCCCT
CTACCTGTTGAACGTATACGTATACCAAACCAACCAAAAGATTTTAGAGA
CATTTGCTTGACACATGAAGAAAATGCTACATCCCCATAACTTTGCTTTG
TAAATGATTGGCAAAATGGTATTAACATTCTATTGAGATGTGAAACTGGT
CCAAGTTGACGAATTGATGAGAAGAATGGAAGTTAATGCTTGGTTCTTAT
TTCACGAGGTCAGAGCAGAGGTTTTGTGgattttataaacttttgaaact
tgtgtgattgttttggttgttttcctgaCGAGATACTGTgaacttttatt
tgataaacattgaattttggcTTGGAGTATGTCTTTTGATGTTTTAACGG
CGTCATCATTTCTTGTTTGGATTGTTGATTGTTGATtggttatttcaatt
ttattttttatcaattaattcGTGTTTATGTGATAGGTTGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023339XLOC_023339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038862-exon-sc0001949-1491911889:6691..7283TCONS_00038862-exon-sc0001949-1491911889:6691..7283Clytia hemisphaericaexon
TCONS_00038862-exon-sc0001949-1510915933:6691..7283TCONS_00038862-exon-sc0001949-1510915933:6691..7283Clytia hemisphaericaexon
TCONS_00038862-exon-sc0001949-1575043694:6691..7283TCONS_00038862-exon-sc0001949-1575043694:6691..7283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001949supercontigsc0001949:6691..7283 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.109344	0.147612	0.175299	0	4.77799	3.10731	1.30616	1.32002	0.661947	0.633775	1.35443	0.335089	0.546866	0.96416	1.14031	1.11495	0.864092	0.81546	0.969773	1.44703	0	0.445049	0.448782	0.891997	1.1484	0.500386	1.7945	1.50749	0.981912	2.01596
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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