TCONS_00038856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038856
Unique NameTCONS_00038856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038856 ID=TCONS_00038856|Name=TCONS_00038856|organism=Clytia hemisphaerica|type=transcript|length=568bp
TTAAGATATCAGTGACcatgttttgtatttttgtctGTGAAAAATCAAGT
ACTTGAACGTTTATTATGATAAAACGCCCTCCTCGAATGGTGTTGTTGGT
TAATTTGATGATTGATTTAAACGAAGTCGCTTTTTTCATTGATATATTCA
ACCACGCATTCCTGGTCGGTGATATCAAAACACAAGATTGTACAGTGATG
TTAAGATTGCTGTTTGTGTTGGTGGTGGATATGAAATCTCCTGTTATATC
TGTTCTAATTTTCAAGTTTCGAAAAGATATAGCGATGCTTGAGTTTTGAT
TCGTAGAGTTAACAATTACGAGACTCTGAAGGTCGACCTGATCAATAGAT
AGACTGAAAGCACCTTTGGGTTGAATGAAGGGTAATTCATTTCCATATAT
AGTCGGGTTCGTTCCATTTTGGCTTTCTTTTGTAATTCGTAACTGAAAAT
AATCACTGTCAGGACGTAACATTCCTTGAGTTTGATAAACAATGCTTTGA
GTCTGAAAGTTTTCCAAAATCACCTTCAGATTGCTattgttaaatttttt
caatacGTGATCAattgt
Run BLAST on NCBI

protein sequence of TCONS_00038856-protein

>TCONS_00038856-protein ID=TCONS_00038856-protein|Name=TCONS_00038856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
TIDHVLKKFNNSNLKVILENFQTQSIVYQTQGMLRPDSDYFQLRITKESQ
NGTNPTIYGNELPFIQPKGAFSLSIDQVDLQSLVIVNSTNQNSSIAISFR
NLKIRTDITGDFISTTNTNSNLNITVQSCVLISPTRNAWLNISMKKATSF
KSIIKLTNNTIRGGRFIIINVQVLDFSQTKIQNMVTDIL
Run BLAST on NCBI

transcript from alignment at sc0001948:23962..24529

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038856 ID=TCONS_00038856|Name=TCONS_00038856|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at sc0001948:23962..24529 (Clytia hemisphaerica)
acaatTGATCACgtattgaaaaaatttaacaatAGCAATCTGAAGGTGAT
TTTGGAAAACTTTCAGACTCAAAGCATTGTTTATCAAACTCAAGGAATGT
TACGTCCTGACAGTGATTATTTTCAGTTACGAATTACAAAAGAAAGCCAA
AATGGAACGAACCCGACTATATATGGAAATGAATTACCCTTCATTCAACC
CAAAGGTGCTTTCAGTCTATCTATTGATCAGGTCGACCTTCAGAGTCTCG
TAATTGTTAACTCTACGAATCAAAACTCAAGCATCGCTATATCTTTTCGA
AACTTGAAAATTAGAACAGATATAACAGGAGATTTCATATCCACCACCAA
CACAAACAGCAATCTTAACATCACTGTACAATCTTGTGTTTTGATATCAC
CGACCAGGAATGCGTGGTTGAATATATCAATGAAAAAAGCGACTTCGTTT
AAATCAATCATCAAATTAACCAACAACACCATTCGAGGAGGGCGTTTTAT
CATAATAAACGTTCAAGTACTTGATTTTTCACagacaaaaatacaaaaca
tgGTCACTGATATCTTAA

Coding sequence (CDS) from alignment at sc0001948:23962..24529

>TCONS_00038856 ID=TCONS_00038856|Name=TCONS_00038856|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0001948:23962..24529 (Clytia hemisphaerica)
acaatTGATCACgtattgaaaaaatttaacaatAGCAATCTGAAGGTGAT
TTTGGAAAACTTTCAGACTCAAAGCATTGTTTATCAAACTCAAGGAATGT
TACGTCCTGACAGTGATTATTTTCAGTTACGAATTACAAAAGAAAGCCAA
AATGGAACGAACCCGACTATATATGGAAATGAATTACCCTTCATTCAACC
CAAAGGTGCTTTCAGTCTATCTATTGATCAGGTCGACCTTCAGAGTCTCG
TAATTGTTAACTCTACGAATCAAAACTCAAGCATCGCTATATCTTTTCGA
AACTTGAAAATTAGAACAGATATAACAGGAGATTTCATATCCACCACCAA
CACAAACAGCAATCTTAACATCACTGTACAATCTTGTGTTTTGATATCAC
CGACCAGGAATGCGTGGTTGAATATATCAATGAAAAAAGCGACTTCGTTT
AAATCAATCATCAAATTAACCAACAACACCATTCGAGGAGGGCGTTTTAT
CATAATAAACGTTCAAGTACTTGATTTTTCACagacaaaaatacaaaaca
tgGTCACTGATATCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023333XLOC_023333Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038856-exon-sc0001948-1491911889:23962..24529TCONS_00038856-exon-sc0001948-1491911889:23962..24529Clytia hemisphaericaexon
TCONS_00038856-exon-sc0001948-1510915933:23962..24529TCONS_00038856-exon-sc0001948-1510915933:23962..24529Clytia hemisphaericaexon
TCONS_00038856-exon-sc0001948-1575043694:23962..24529TCONS_00038856-exon-sc0001948-1575043694:23962..24529Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038856-proteinTCONS_00038856-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001948supercontigsc0001948:23962..24529 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.266539	0.421245	1.46981	1.56507	0.52806	0.987454	0	0.463012	0.961062	0.860948	0	0	0.330922	0	0.584816	1.57721	0	0.139816	0	0	0	0.206507	0.135507	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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