|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038850 ID=TCONS_00038850|Name=TCONS_00038850|organism=Clytia hemisphaerica|type=transcript|length=1683bp
GGACAAAGTCCGATCTTGCCGAAGTACTCGGTGGCTTATCTGCAGAATGT
TTAGCATCCCAGCAACCTACATCCGATGCTGTTGTTTTAGATGGTCCAGC
CATAATCCACATGGTAGCACCTAAAAATGGGTCTACTGTTGACGAGTACT
CCAAAGTCTTTGCAACTCATGTCAATTCGTATTTTAATGATGTAAACATA
GTCGATGTTATCTTTGATATTTATCTAGATTCAAGTCTTAAAGAAGGTGT
GCGAGAAACCCGTGGTACTGCCCCTTCTCAGATCGTCAAAGGTACCACTA
AAATTTCGAAATGGTCAAAGTTCTTGAAGAATAGTTCAAATAAGCAACGC
CTTTTTGAATACATTGCCCATTATCTTAAATCTCAGGTGACTCCTTCTAA
TAATAAGCAACTTATCGTTACGTGTCGTGACATGGTGATAACAAACCCAA
TTTCCGTTGGTTTGGAAGAAATTTTATCACCGTGTGACCATGAAGAAGCC
GACACTCGTATGATACTGCACGCGAGTAATATCCTTGAAGATTTGTCATC
CGTCACCTTAAGAACAGTTGATACAGATGTGTTGGTTCTTGCTGTAGCTT
TATCTAACAAGTACCCAACGAAAAGGATCTGGGTCAGCTTTGGCGTTGGt
gatcaaaagaaaatgttttcggCACATGAAATCCGCATTCAAGTTGGTCC
GGAGAAAGCTCAGGCACTGCCAATGTTCCATGCTTTCACAGGCTGCGACA
CGGTGTCCTCATTTAAAAATGTCGGCAAGAAAACAGCATGGGAAAGGTGG
GCATCGTTTGATGATGTTACTGACGCTTTTCTCCACTTGACAGAATCACC
AGACGACCTGAACAAGGAAACCGAAGCTCTTCTCGAACGTTTTGCAATCC
TCCTGTACGATAAAACAAGTCCGCTAACAAGTATCAATCTTCTACGTAAA
GAACTCTTCAACCGAGGTCGCTCAATTGAAAAGATTCCACCCACTTCAGG
AGCATTAGTTCAACACAGTCGACGTACAACCTTACAGGGAGGACATTGCT
GGGGTAAATCAACCCAGAACAAGATGAATCTTCCACCTGTCACAGGTTGG
GGATGGCTGGACAATAAGCAACCTCTATGGACAGTTGACCCGATCGCAAG
TAAGGCTTGTAAACAGCTTACGAAATGTGGATGTAAAGCTAAAGATGGTA
TTTTTAAATGCAGCGGTCCTTGTGGATGCAAAAGGTCGCAGCAAAATTGT
ACGGACTTGTGTAAGTGTAAAGGCAGTTGTAAATGGTGGGAAGATAATGA
CGAAGATAGTTCCGACGACGATGAAGATGATGGATCGGTCGAGCCCCAAG
CTATTGAAAACGAAGACTTGGAAGAATATTCGAATTAAACACTTTCAGAT
TTTGTTACATTTTATCACTTAACTATGTGGCACTTCAGATTATTTATTTC
CAAATATGAGATTTTACTTCAAGATAGTCTATTTATAGTTTTTAATTAGG
CAATCATTTAATTAGCGGATAGTTTTTACTTGAATACTTATAATCAAGCG
TCGAGACTTCGATCTAACCAACATTGTGTCACATTTAaagttaaatttat
ttttcctataCATTTGAGTTTCATGAGAAAATTGTCTAATTAAGGGGTAA
TTAAGGTTGAATAATATGTTAATTAAGAGAGTG Run BLAST on NCBI protein sequence of TCONS_00038850-protein >TCONS_00038850-protein ID=TCONS_00038850-protein|Name=TCONS_00038850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp
TKSDLAEVLGGLSAECLASQQPTSDAVVLDGPAIIHMVAPKNGSTVDEYS
KVFATHVNSYFNDVNIVDVIFDIYLDSSLKEGVRETRGTAPSQIVKGTTK
ISKWSKFLKNSSNKQRLFEYIAHYLKSQVTPSNNKQLIVTCRDMVITNPI
SVGLEEILSPCDHEEADTRMILHASNILEDLSSVTLRTVDTDVLVLAVAL
SNKYPTKRIWVSFGVGDQKKMFSAHEIRIQVGPEKAQALPMFHAFTGCDT
VSSFKNVGKKTAWERWASFDDVTDAFLHLTESPDDLNKETEALLERFAIL
LYDKTSPLTSINLLRKELFNRGRSIEKIPPTSGALVQHSRRTTLQGGHCW
GKSTQNKMNLPPVTGWGWLDNKQPLWTVDPIASKACKQLTKCGCKAKDGI
FKCSGPCGCKRSQQNCTDLCKCKGSCKWWEDNDEDSSDDDEDDGSVEPQA
IENEDLEEYSN Run BLAST on NCBI transcript from alignment at sc0001946:3788..5470 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038850 ID=TCONS_00038850|Name=TCONS_00038850|organism=Clytia hemisphaerica|type=transcript|length=1683bp|location=Sequence derived from alignment at sc0001946:3788..5470 (Clytia hemisphaerica)
CACTCTCTTAATTAACATATTATTCAACCTTAATTACCCCTTAATTAGAC
AATTTTCTCATGAAACTCAAATGtataggaaaaataaatttaacttTAAA
TGTGACACAATGTTGGTTAGATCGAAGTCTCGACGCTTGATTATAAGTAT
TCAAGTAAAAACTATCCGCTAATTAAATGATTGCCTAATTAAAAACTATA
AATAGACTATCTTGAAGTAAAATCTCATATTTGGAAATAAATAATCTGAA
GTGCCACATAGTTAAGTGATAAAATGTAACAAAATCTGAAAGTGTTTAAT
TCGAATATTCTTCCAAGTCTTCGTTTTCAATAGCTTGGGGCTCGACCGAT
CCATCATCTTCATCGTCGTCGGAACTATCTTCGTCATTATCTTCCCACCA
TTTACAACTGCCTTTACACTTACACAAGTCCGTACAATTTTGCTGCGACC
TTTTGCATCCACAAGGACCGCTGCATTTAAAAATACCATCTTTAGCTTTA
CATCCACATTTCGTAAGCTGTTTACAAGCCTTACTTGCGATCGGGTCAAC
TGTCCATAGAGGTTGCTTATTGTCCAGCCATCCCCAACCTGTGACAGGTG
GAAGATTCATCTTGTTCTGGGTTGATTTACCCCAGCAATGTCCTCCCTGT
AAGGTTGTACGTCGACTGTGTTGAACTAATGCTCCTGAAGTGGGTGGAAT
CTTTTCAATTGAGCGACCTCGGTTGAAGAGTTCTTTACGTAGAAGATTGA
TACTTGTTAGCGGACTTGTTTTATCGTACAGGAGGATTGCAAAACGTTCG
AGAAGAGCTTCGGTTTCCTTGTTCAGGTCGTCTGGTGATTCTGTCAAGTG
GAGAAAAGCGTCAGTAACATCATCAAACGATGCCCACCTTTCCCATGCTG
TTTTCTTGCCGACATTTTTAAATGAGGACACCGTGTCGCAGCCTGTGAAA
GCATGGAACATTGGCAGTGCCTGAGCTTTCTCCGGACCAACTTGAATGCG
GATTTCATGTGccgaaaacattttcttttgatcaCCAACGCCAAAGCTGA
CCCAGATCCTTTTCGTTGGGTACTTGTTAGATAAAGCTACAGCAAGAACC
AACACATCTGTATCAACTGTTCTTAAGGTGACGGATGACAAATCTTCAAG
GATATTACTCGCGTGCAGTATCATACGAGTGTCGGCTTCTTCATGGTCAC
ACGGTGATAAAATTTCTTCCAAACCAACGGAAATTGGGTTTGTTATCACC
ATGTCACGACACGTAACGATAAGTTGCTTATTATTAGAAGGAGTCACCTG
AGATTTAAGATAATGGGCAATGTATTCAAAAAGGCGTTGCTTATTTGAAC
TATTCTTCAAGAACTTTGACCATTTCGAAATTTTAGTGGTACCTTTGACG
ATCTGAGAAGGGGCAGTACCACGGGTTTCTCGCACACCTTCTTTAAGACT
TGAATCTAGATAAATATCAAAGATAACATCGACTATGTTTACATCATTAA
AATACGAATTGACATGAGTTGCAAAGACTTTGGAGTACTCGTCAACAGTA
GACCCATTTTTAGGTGCTACCATGTGGATTATGGCTGGACCATCTAAAAC
AACAGCATCGGATGTAGGTTGCTGGGATGCTAAACATTCTGCAGATAAGC
CACCGAGTACTTCGGCAAGATCGGACTTTGTCC Coding sequence (CDS) from alignment at sc0001946:3788..5470 >TCONS_00038850 ID=TCONS_00038850|Name=TCONS_00038850|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0001946:3788..5470 (Clytia hemisphaerica)
TTAATTCGAATATTCTTCCAAGTCTTCGTTTTCAATAGCTTGGGGCTCGA
CCGATCCATCATCTTCATCGTCGTCGGAACTATCTTCGTCATTATCTTCC
CACCATTTACAACTGCCTTTACACTTACACAAGTCCGTACAATTTTGCTG
CGACCTTTTGCATCCACAAGGACCGCTGCATTTAAAAATACCATCTTTAG
CTTTACATCCACATTTCGTAAGCTGTTTACAAGCCTTACTTGCGATCGGG
TCAACTGTCCATAGAGGTTGCTTATTGTCCAGCCATCCCCAACCTGTGAC
AGGTGGAAGATTCATCTTGTTCTGGGTTGATTTACCCCAGCAATGTCCTC
CCTGTAAGGTTGTACGTCGACTGTGTTGAACTAATGCTCCTGAAGTGGGT
GGAATCTTTTCAATTGAGCGACCTCGGTTGAAGAGTTCTTTACGTAGAAG
ATTGATACTTGTTAGCGGACTTGTTTTATCGTACAGGAGGATTGCAAAAC
GTTCGAGAAGAGCTTCGGTTTCCTTGTTCAGGTCGTCTGGTGATTCTGTC
AAGTGGAGAAAAGCGTCAGTAACATCATCAAACGATGCCCACCTTTCCCA
TGCTGTTTTCTTGCCGACATTTTTAAATGAGGACACCGTGTCGCAGCCTG
TGAAAGCATGGAACATTGGCAGTGCCTGAGCTTTCTCCGGACCAACTTGA
ATGCGGATTTCATGTGccgaaaacattttcttttgatcaCCAACGCCAAA
GCTGACCCAGATCCTTTTCGTTGGGTACTTGTTAGATAAAGCTACAGCAA
GAACCAACACATCTGTATCAACTGTTCTTAAGGTGACGGATGACAAATCT
TCAAGGATATTACTCGCGTGCAGTATCATACGAGTGTCGGCTTCTTCATG
GTCACACGGTGATAAAATTTCTTCCAAACCAACGGAAATTGGGTTTGTTA
TCACCATGTCACGACACGTAACGATAAGTTGCTTATTATTAGAAGGAGTC
ACCTGAGATTTAAGATAATGGGCAATGTATTCAAAAAGGCGTTGCTTATT
TGAACTATTCTTCAAGAACTTTGACCATTTCGAAATTTTAGTGGTACCTT
TGACGATCTGAGAAGGGGCAGTACCACGGGTTTCTCGCACACCTTCTTTA
AGACTTGAATCTAGATAAATATCAAAGATAACATCGACTATGTTTACATC
ATTAAAATACGAATTGACATGAGTTGCAAAGACTTTGGAGTACTCGTCAA
CAGTAGACCCATTTTTAGGTGCTACCATGTGGATTATGGCTGGACCATCT
AAAACAACAGCATCGGATGTAGGTTGCTGGGATGCTAAACATTCTGCAGA
TAAGCCACCGAGTACTTCGGCAAGATCGGACTTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038850-exon-sc0001946-1491911889:3788..5470 | TCONS_00038850-exon-sc0001946-1491911889:3788..5470 | Clytia hemisphaerica | exon |
| TCONS_00038850-exon-sc0001946-1510915933:3788..5470 | TCONS_00038850-exon-sc0001946-1510915933:3788..5470 | Clytia hemisphaerica | exon |
| TCONS_00038850-exon-sc0001946-1575043694:3788..5470 | TCONS_00038850-exon-sc0001946-1575043694:3788..5470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001946 | supercontig | sc0001946:3788..5470 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020045 | 5-3_exonuclease_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0003824 | catalytic activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
|
