TCONS_00038848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038848
Unique NameTCONS_00038848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038848 ID=TCONS_00038848|Name=TCONS_00038848|organism=Clytia hemisphaerica|type=transcript|length=838bp
GGTTCGAACGTTCTTCATTATGTTGGTGTTTATGGAGAAGTTCGTCATTT
GGAAAAGTTTGAtcaacaaacaatcaaaatgttgATCGATGGAAGAAACA
ACTATAACGACACACCATTGCATAAAGCAGCAAGTTTCaacaatcatgac
gtcatcagatggtTGTTGGCCAAAGGAGCGAATCCTGAATTGAAAGACAT
TCATGGTCAACGCCCTGATGAACATGGATGGTGTGATGGTGTTACCAAAG
AAATCTTTCGATCGTTTCGTTCGTCTTGattgtttgattgattgtttCCA
TTGTCTGTTTCATCGTTTCCAATGACGCCATCGGTTCCAAACATTTCCAC
attcccAACATGACAGCACGCATGAGAAGTTAAACCCGTCATTTTCGACG
CCGTTTCTACGCTTACGTTATTTATTCAATCCGTCTCTACATTTTTGTAA
CGCAAACGCGTTATTACTCCTTCATTTTGACTTGTTTTTAGATgcacagt
aaaacctctaattaacggacactctaaacggcggacacctctgattagcg
gacaatttcactGTATTTTTACCACTTCACTAACTTGACTATTATTACGT
CAACTGTCACTATTTTGGTGGCGTGTCTATTCTTACGTCCTTACGTTTCC
ACCTTATGGATTACCTTGGTTGAATATGAAAAAGAGTACAGTGCTAAAAG
TCACGTCGCTATTGATTTCGATTGGATCATTTCCTTTGTAAATATCCGAC
TTTTTTTCACTAACTCGGTGAAATTTTGCTCAGTCAGGAAAACCCTGTCA
ACGGTGGCCTCGGTGAAAACATGAATTTTTTCTTACGG
Run BLAST on NCBI

transcript from alignment at sc0001946:29066..30868+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038848 ID=TCONS_00038848|Name=TCONS_00038848|organism=Clytia hemisphaerica|type=transcript|length=1803bp|location=Sequence derived from alignment at sc0001946:29066..30868+ (Clytia hemisphaerica)
GGTTCGAACGTTCTTCATTATGTTGGTGTTTATGGAGAAGTTCGTCATTT
GGAAAAGTTTGAtcaacaaacaatcaaaatgttgATCGATGGAAGAAACA
ACTATAACGACACACCATTGCATAAAGCAGCAAGTTTCaacaatcatgac
gtcatcagatggtTGTTGGCCAAAGGAGCGAATCCTGAATTGAAAGACAT
TCATGGTCAACGCCCTGATGAACATGGATGGTGTGATGGTGTTACCAAAG
AAATCTTTCGATCGTTTCGTTCGTCTTGGTAAGAAAAATATCCACTTTTT
CATGGATAGGAACATTTTTTCGgttggaaatcttttttttctattatagT
GCAAAGTGTtaaaactttttcttaaaagtttttatttaaaatagatgtga
aatgttttttaggtagactttaaatttttcagtttgataaattttacctT
TTCGGAGTTTAAATGAATGAAACGGataaattaatttcaattttttgatt
aagatttttcattgcattggAGCAGACATATTTTGGAGACATATTTTTGC
AAATAGATggttgtttatgaaattttttctctggtTGTTATGAATTAATT
TTTCAGTGAAGAAAGATATTGtcgtttttttcgatttcatagTACGTGTG
TTCATGTATTTGTTTTCAATTGTTTCTCATTCGatgatttatttttcaga
ttgtttgattgattgtttCCATTGTCTGTTTCATCGTTTCCAATGACGCC
ATCGGTTCCAAACATTTCCACGTAAGTCTATTTGATTATGTATTTGGTTT
CTGGTTGAAGCAAAATTGTGTATGAAGCCTAAAATATCCTAACTTTGACC
TGGAAGTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCcaggtattcacccaagg
aacaagtgtaccaaatttcagccaaaacggacaaagtatatttgctacct
aatattaaatatttgaaatgttacaattgggccttctaataacgggaaaa
tctgaagttgagcccagtgcggtgcgcacgttcgactatttagtagttct
tataaaaaaattcgtgATCAGATTCTCAGCATTCTgcttttaaaaaaaca
tttattcaTCTTCAAGAAGTCAACAAGTTTAGTTTGGCAATAAACctcca
attttttatttttagattcccAACATGACAGCACGCATGAGAAGTTAAAC
CCGTCATTTTCGACGCCGTTTCTACGCTTACGTTATTTATTCAATCCGTC
TCTACATTTTTGTAACGCAAACGCGTTATTACTCCTTCATTTTGACTTGT
TTTTAGATgcacagtaaaacctctaattaacggacactctaaacggcgga
cacctctgattagcggacaatttcactGTATTTTTACCACTTCACTAACT
TGACTATTATTACGTCAACTGTCACTATTTTGGTGGCGTGTCTATTCTTA
CGTCCTTACGTTTCCACCTTATGGATTACCTTGGTTGAATATGAAAAAGA
GTACAGTGCTAAAAGTCACGTCGCTATTGATTTCGATTGGATCATTTCCT
TTGTAAATATCCGACTTTTTTTCACTAACTCGGTGAAATTTTGCTCAGTC
AGGAAAACCCTGTCAACGGTGGCCTCGGTGAAAACATGAATTTTTTCTTA
CGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023325XLOC_023325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038848-exon-sc0001946-1491911889:29066..29343TCONS_00038848-exon-sc0001946-1491911889:29066..29343Clytia hemisphaericaexon
TCONS_00038848-exon-sc0001946-1510915933:29066..29343TCONS_00038848-exon-sc0001946-1510915933:29066..29343Clytia hemisphaericaexon
TCONS_00038848-exon-sc0001946-1575043694:29066..29343TCONS_00038848-exon-sc0001946-1575043694:29066..29343Clytia hemisphaericaexon
TCONS_00038848-exon-sc0001946-1491911889:29765..29836TCONS_00038848-exon-sc0001946-1491911889:29765..29836Clytia hemisphaericaexon
TCONS_00038848-exon-sc0001946-1510915933:29765..29836TCONS_00038848-exon-sc0001946-1510915933:29765..29836Clytia hemisphaericaexon
TCONS_00038848-exon-sc0001946-1575043694:29765..29836TCONS_00038848-exon-sc0001946-1575043694:29765..29836Clytia hemisphaericaexon
TCONS_00038848-exon-sc0001946-1491911889:30381..30868TCONS_00038848-exon-sc0001946-1491911889:30381..30868Clytia hemisphaericaexon
TCONS_00038848-exon-sc0001946-1510915933:30381..30868TCONS_00038848-exon-sc0001946-1510915933:30381..30868Clytia hemisphaericaexon
TCONS_00038848-exon-sc0001946-1575043694:30381..30868TCONS_00038848-exon-sc0001946-1575043694:30381..30868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001946supercontigsc0001946:29066..30868 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.295992	0.125326	0	0	0	0.0649318	0	0.0737039	0.174259	0.278082	0.411223	0.093238	2.23068	2.24257	3.14536	4.08345	1.12664	1.6218	2.50701	1.23778	0.562567	0.715125	1.96207	1.77676	0.142914	0.554743	3.16322	2.40653	3.64644	3.29926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top