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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038844 ID=TCONS_00038844|Name=TCONS_00038844|organism=Clytia hemisphaerica|type=transcript|length=1802bp
tttttaccttcgctgatgatttttcagtttgaatttatgtctaatgttat
tgatttttgaagtgcttgttctaagagatgagcgaatataattatttttg
gacctaccgggaggtcctttaactCTTTGGCAGATATGGGGGTCGTTAAC
GACCCCCCATTAAATTATTGAGAAAAACGGAGTTTCTAGGCTATAAAAAG
CCGTGATTTTTATATGTACAGGTGAACTTATGTTATTAGAGACGGAAAAG
TCTCACTTGAACGATCATAAACCCGTGTGCTATTAGTAATATGTAGGCTG
ACAAGCtgcaaaacattgaaatattcAGTTTCAAGCAGCCACACTGGTTG
AGTTTGAAGAAGATTTGAGCAGATTCAACTGGTTTTTATGGTCGAAATCA
ATGCAGAATGAACTTTTATAGTTTGTGTAATGTTTTGGCTTCAAATTGTT
TGTAAAGAGTAACTCATTCTATCACACAATATCCATGGGGGTTGAATTGG
TATACGTCAAACGTCGCCCACATTTTTGTCAGATGAAAAGACATTTGTAA
CATGTCTCATAATCCAGTTTTCAAGCCACAACAAGACAACAAGGCTAACT
AAATCTTTTTTGTATAATTCTGAAAGAACACTCAATTTGCATACAAAGTG
GCTCTCATTGGACTACCCAAGCTCTTCCTGGTGTGGTTCAAAGTTTTCGT
ATATAATTCAAACATTTCGTGACGACAAAGACCAGGCTGCACAAGGCGTC
TCTATGACCATAATTATAAATGACTAGCACTTGGATTTATCACTGATTTA
CTTGCTCAAATCACATACAATGGCCTTTGTTTACAACAGAAAGGTTATTT
GACCAATTTCATCTCATGGACATTTCTGATTTTCAAGTTATACCGCATGA
CACCCTGAATGGACGTAGCATAGCTCACGTTATTGCCGTACATGGTTAGA
ATTTGAAAATGGACATATTAACTGGCCAATTCCTGCAAGACATTATTAAA
Tacaccgtagagtcgtttaatatcgagatacgtcttgcaatctcgacata
gctgtaggctggtcttcgaaataaaaaatcaaacataaacaaatacatac
cgcaggctgcatcatttgaggcGTGCGATAGCACGTgcacacctccacac
acacctaaaatgtcTGAGGAGTGCGATCAATCACACCCCATAAAGTAAGT
TTCACAACTGAAAGTTGTGCATAGCTATCacacgcctaaattactaaaat
taaggttttaggagtgtgattgaccacacgcctgaaattttcaaatgatg
cagcctgatACCAANagaatgataccaagaatttcattcaaggtttgttt
tgattattttacagatccggtgtcgagattgcaagacgtatgtcgagatt
agacgatcctacggtacTTAGAATGTCTAGTTTCATGATTTTGAACCCTT
GAAATAGACTCATAAGAAGATTTTCATGTCATGAAACTGATAGTAgattt
attacaattttataCCGTTTTCTGTCATTTTACGCGTTCACcgaaatatc
aatatttttNgtagtaatcactaaaaaactaattagcatgctttcaacga
agatgcccaaatcacaacaacattttgcacgcgaggaattttttagtaga
tctttttaccgtgaaccgaaaataattaaaagaacctggtttccttatga
atttgaaaagggacaNGCCTTAGGTCTAAAATTTTCAGCATTTGATTATA
ttgtatataagaacatttgtaCAAAGTTTTAGAGAAAACTGACAGTTATT
TT Run BLAST on NCBI transcript from alignment at sc0001945:11819..13620 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038844 ID=TCONS_00038844|Name=TCONS_00038844|organism=Clytia hemisphaerica|type=transcript|length=1802bp|location=Sequence derived from alignment at sc0001945:11819..13620 (Clytia hemisphaerica)
AAAATAACTGTCAGTTTTCTCTAAAACTTTGtacaaatgttcttatatac
aaTATAATCAAATGCTGAAAATTTTAGACCTAAGGCNtgtcccttttcaa
attcataaggaaaccaggttcttttaattattttcggttcacggtaaaaa
gatctactaaaaaattcctcgcgtgcaaaatgttgttgtgatttgggcat
cttcgttgaaagcatgctaattagttttttagtgattactacNaaaaata
ttgatatttcgGTGAACGCGTAAAATGACAGAAAACGGtataaaattgta
ataaatcTACTATCAGTTTCATGACATGAAAATCTTCTTATGAGTCTATT
TCAAGGGTTCAAAATCATGAAACTAGACATTCTAAgtaccgtaggatcgt
ctaatctcgacatacgtcttgcaatctcgacaccggatctgtaaaataat
caaaacaaaccttgaatgaaattcttggtatcattctNTTGGTatcaggc
tgcatcatttgaaaatttcaggcgtgtggtcaatcacactcctaaaacct
taattttagtaatttaggcgtgtGATAGCTATGCACAACTTTCAGTTGTG
AAACTTACTTTATGGGGTGTGATTGATCGCACTCCTCAgacattttaggt
gtgtgtggaggtgtgcACGTGCTATCGCACgcctcaaatgatgcagcctg
cggtatgtatttgtttatgtttgattttttatttcgaagaccagcctaca
gctatgtcgagattgcaagacgtatctcgatattaaacgactctacggtg
tATTTAATAATGTCTTGCAGGAATTGGCCAGTTAATATGTCCATTTTCAA
ATTCTAACCATGTACGGCAATAACGTGAGCTATGCTACGTCCATTCAGGG
TGTCATGCGGTATAACTTGAAAATCAGAAATGTCCATGAGATGAAATTGG
TCAAATAACCTTTCTGTTGTAAACAAAGGCCATTGTATGTGATTTGAGCA
AGTAAATCAGTGATAAATCCAAGTGCTAGTCATTTATAATTATGGTCATA
GAGACGCCTTGTGCAGCCTGGTCTTTGTCGTCACGAAATGTTTGAATTAT
ATACGAAAACTTTGAACCACACCAGGAAGAGCTTGGGTAGTCCAATGAGA
GCCACTTTGTATGCAAATTGAGTGTTCTTTCAGAATTATACAAAAAAGAT
TTAGTTAGCCTTGTTGTCTTGTTGTGGCTTGAAAACTGGATTATGAGACA
TGTTACAAATGTCTTTTCATCTGACAAAAATGTGGGCGACGTTTGACGTA
TACCAATTCAACCCCCATGGATATTGTGTGATAGAATGAGTTACTCTTTA
CAAACAATTTGAAGCCAAAACATTACACAAACTATAAAAGTTCATTCTGC
ATTGATTTCGACCATAAAAACCAGTTGAATCTGCTCAAATCTTCTTCAAA
CTCAACCAGTGTGGCTGCTTGAAACTgaatatttcaatgttttgcaGCTT
GTCAGCCTACATATTACTAATAGCACACGGGTTTATGATCGTTCAAGTGA
GACTTTTCCGTCTCTAATAACATAAGTTCACCTGTACATATAAAAATCAC
GGCTTTTTATAGCCTAGAAACTCCGTTTTTCTCAATAATTTAATGGGGGG
TCGTTAACGACCCCCATATCTGCCAAAGagttaaaggacctcccggtagg
tccaaaaataattatattcgctcatctcttagaacaagcacttcaaaaat
caataacattagacataaattcaaactgaaaaatcatcagcgaaggtaaa
aa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038844-exon-sc0001945-1491911889:11819..13620 | TCONS_00038844-exon-sc0001945-1491911889:11819..13620 | Clytia hemisphaerica | exon |
| TCONS_00038844-exon-sc0001945-1510915933:11819..13620 | TCONS_00038844-exon-sc0001945-1510915933:11819..13620 | Clytia hemisphaerica | exon |
| TCONS_00038844-exon-sc0001945-1575043694:11819..13620 | TCONS_00038844-exon-sc0001945-1575043694:11819..13620 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001945 | supercontig | sc0001945:11819..13620 . |
Blast
The following BLAST results are available for this feature:
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