TCONS_00038836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038836
Unique NameTCONS_00038836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038836 ID=TCONS_00038836|Name=TCONS_00038836|organism=Clytia hemisphaerica|type=transcript|length=552bp
GTTCTACATGGCCAAACCAGCAGCTCAACCATCTTCAACGAACAAATTCT
CGGTAAAAAATTTTCGATCAATACCAGTACTTTCttatttcatctttttt
caTAAGCAAATCGTTTTTGAAGCACATATAGATGTTTTAACATGTTGAGC
CTATTTCACATTAAAAATACGTTTTTCACTAGAACAAATTTATTTGAAGC
TTTACATGACCTTTTTGAACTAATATTCCCGACCACAACTTACCTTAAAC
AGATGTAATCTTGATTTTTCATttagtttttaaatttcatgaCAAACTGC
TTACTCTGActtttgattgtatttttaaATGCGACGTACAAAATGACGTT
ATTACGTACAAAACGAGGTCAACGAGTTGAAATCAGATAATATACGGACA
TTGACTTGACGTACAGGACGATATGCAGAGCTTCAGATTTTGACAAACAA
ACACTATCATTTTAAAAATCTCAACGCAAAGCACAAACGTCAAAACGAAT
ACTGAAGATGTGAATGAAGATGAAACCAGTATACATTTCGTCATGCAAAA
GG
Run BLAST on NCBI

transcript from alignment at sc0001944:25443..26162+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038836 ID=TCONS_00038836|Name=TCONS_00038836|organism=Clytia hemisphaerica|type=transcript|length=720bp|location=Sequence derived from alignment at sc0001944:25443..26162+ (Clytia hemisphaerica)
GTTCTACATGGCCAAACCAGCAGCTCAACCATCTTCAACGAACAAATTCT
CGGTAAAAAATTTTCGATCAATACCAGTACTTTCttatttcatctttttt
caTAAGCAAATCGTTTTTGAAGCACATATAGATGTTTTAACATGTTGAGC
CTATTTCACATTAAAAATACGTTTTTCACTAGAACAAATTTATTTGAAGC
TTTACATGACCTTTTTGAACTAATATTCCCGACCACAACTTACCTTAAAC
AGATGTAATCTTGATTTTTCATttagtttttaaatttcatgaCAAACTGC
TTACTCTGActtttgattgtatttttaaATGCGACGTACAAAATGACGTT
ATTACGTACAAAACGAGGTCAACGAGTTGAAATCAGATAATATACGGACA
TTGACTTGACGTACAGGACGATATGCAGAGCTTCAGATTTTGACAAACAA
ACACTATCATTTTAAGTAAATCATTTACTGAAATCTTGTTTTctatagaa
actttttttatatgtataAACCTTCAAACATTCAATCTTTCGTTCTTGAA
TATAAGCTTTTTTGGTGTAAGCTATCATTTGTTGTGAAAGATCGTCCAAA
GATTCAATTTAATGTATACTATATTTCAATTAGAAATCTCAACGCAAAGC
ACAAACGTCAAAACGAATACTGAAGATGTGAATGAAGATGAAACCAGTAT
ACATTTCGTCATGCAAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023317XLOC_023317Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038836-exon-sc0001944-1491911889:25443..25907TCONS_00038836-exon-sc0001944-1491911889:25443..25907Clytia hemisphaericaexon
TCONS_00038836-exon-sc0001944-1510915933:25443..25907TCONS_00038836-exon-sc0001944-1510915933:25443..25907Clytia hemisphaericaexon
TCONS_00038836-exon-sc0001944-1575043694:25443..25907TCONS_00038836-exon-sc0001944-1575043694:25443..25907Clytia hemisphaericaexon
TCONS_00038836-exon-sc0001944-1491911889:26076..26162TCONS_00038836-exon-sc0001944-1491911889:26076..26162Clytia hemisphaericaexon
TCONS_00038836-exon-sc0001944-1510915933:26076..26162TCONS_00038836-exon-sc0001944-1510915933:26076..26162Clytia hemisphaericaexon
TCONS_00038836-exon-sc0001944-1575043694:26076..26162TCONS_00038836-exon-sc0001944-1575043694:26076..26162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001944supercontigsc0001944:25443..26162 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03434	1.81555	0.468452	0.458307	0.139486	0	0.13298	0.373484	0	0	0.628753	0	0.0687905	0	0	0	0	0	0	0.115057	0	0.292675	0.118595	0.21564	0	0	0	0	0	0.233933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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