TCONS_00038835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038835
Unique NameTCONS_00038835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038835 ID=TCONS_00038835|Name=TCONS_00038835|organism=Clytia hemisphaerica|type=transcript|length=522bp
TGTTCTGGAATACCACGGGATGTGGTGGAAGAGTTTGTACGCTTGTGTGT
GACTTGTGCTTTGAGGAGAGTTCCAAACAAAAAGGACCCATCAAGCCAAT
TATCTCTAAAGGCTTCATGCAACGTGTACAGGTTGACCTAATTGACATGC
GCTCTGAGCCTGATGGACCATATAAATGGATTGGAAACTGCCAAGATCAT
TACACAGAATTTACCGTCCTCATTTTAATGCCAGACAAAGAAGCCCAAAC
AACATGACGATTATTCATTGAAcggttttttggtatttttggacttccaa
agctACTCCAATCTGACAATGGGACCGaatttgtcaataaaattgTTCAA
GCTGTCATTGTTATGTGGCCTGGCAGCAGTAAAATCATAAATGGTGGAGT
GGGTCATTCACAATCGCAAGGCTCTGCCGAGGAAAGAAATGCGGTGGTTA
GGAGGGCAATTTATAATCGCCAGTGCGATTTAAAAAccaacaaatggtca
agttgGCTCCCTGAGATTCAAT
Run BLAST on NCBI

transcript from alignment at sc0001944:19399..20146+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038835 ID=TCONS_00038835|Name=TCONS_00038835|organism=Clytia hemisphaerica|type=transcript|length=748bp|location=Sequence derived from alignment at sc0001944:19399..20146+ (Clytia hemisphaerica)
TGTTCTGGAATACCACGGGATGTGGTGGAAGAGTTTGTACGCTTGTGTGT
GACTTGTGCTTTGAGGAGAGTTCCAAACAAAAAGGACCCATCAAGCCAAT
TATCTCTAAAGGCTTCATGCAACGTGTACAGGTATCATTGCaacagattt
caaaattttttaaatagtgCTTTTTCAGCCTAAGCTCAATGCTAGTTTTA
AATCATACATTGTACAAAGCAGGGAAAAAGTAACTGtaaattgtttaatt
ttttcttgGTTGTATAAGCACTTTTGAATTGAATACAATAAGTATCCAGA
AAAATGCTAACAAAGCTGAACAAAGATCAACCTTCTCAAGAAGGTTTTTT
TAAACAGGTTGACCTAATTGACATGCGCTCTGAGCCTGATGGACCATATA
AATGGATTGGAAACTGCCAAGATCATTACACAGAATTTACCGTCCTCATT
TTAATGCCAGACAAAGAAGCCCAAACAACATGACGATTATTCATTGAAcg
gttttttggtatttttggacttccaaagctACTCCAATCTGACAATGGGA
CCGaatttgtcaataaaattgTTCAAGCTGTCATTGTTATGTGGCCTGGC
AGCAGTAAAATCATAAATGGTGGAGTGGGTCATTCACAATCGCAAGGCTC
TGCCGAGGAAAGAAATGCGGTGGTTAGGAGGGCAATTTATAATCGCCAGT
GCGATTTAAAAAccaacaaatggtcaagttgGCTCCCTGAGATTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023316XLOC_023316Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038835-exon-sc0001944-1491911889:19399..19529TCONS_00038835-exon-sc0001944-1491911889:19399..19529Clytia hemisphaericaexon
TCONS_00038835-exon-sc0001944-1510915933:19399..19529TCONS_00038835-exon-sc0001944-1510915933:19399..19529Clytia hemisphaericaexon
TCONS_00038835-exon-sc0001944-1575043694:19399..19529TCONS_00038835-exon-sc0001944-1575043694:19399..19529Clytia hemisphaericaexon
TCONS_00038835-exon-sc0001944-1491911889:19756..20146TCONS_00038835-exon-sc0001944-1491911889:19756..20146Clytia hemisphaericaexon
TCONS_00038835-exon-sc0001944-1510915933:19756..20146TCONS_00038835-exon-sc0001944-1510915933:19756..20146Clytia hemisphaericaexon
TCONS_00038835-exon-sc0001944-1575043694:19756..20146TCONS_00038835-exon-sc0001944-1575043694:19756..20146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001944supercontigsc0001944:19399..20146 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.793432	1.32638	0.256676	0.125558	0	0.120788	0	0	0.191031	0	0	0	0.0753838	0	0	0	0	0	0	0	0.109591	0	0	0.118154	0	0.108611	0	0	0	0
Blast
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BLAST of TCONS_00038835 vs. Swiss-Prot (Human)
Match: SCND3 (SCAN domain-containing protein 3 OS=Homo sapiens GN=ZBED9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.730e-18
Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 3 
Query:   45 VCDLCFEESSKQKGPIKPIISKGFMQRVQVDLIDMRSEPDGPYKWIGNCQDHYTEFTVLILMPDKEAQTT*RLFIERFFGIFGLPKLLQSDNGTEFVNKIVQAVIVMWPGSSKIINGGVGHSQSQGSAEERNAVVRRAIYNRQCDLKTNKWSSW 506
            +C  C +++SK K  +     K    R QVDLIDM+  PDG Y++I + QD  T+ T L  +  K         ++  F I G P +LQSDNG EF +++V  +  +WP   KI++G     QSQ SAE+    +R+ I++    ++TN  S W
Sbjct:  348 LCKPCQQKNSKLKKVLTSKSIKEVSSRCQVDLIDMQLNPDGEYRFILHYQDLCTKLTFLRSLKSKRPTEVAHALLD-IFTIIGAPSVLQSDNGREFSSQVVSELSNIWP-ELKIVHGKSQTCQSQSSAEQTED-IRKRIFSW---MQTNNSSHW 495
The following BLAST results are available for this feature:
BLAST of TCONS_00038835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCND31.730e-1835.71SCAN domain-containing protein 3 OS=Homo sapiens G... [more]
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