TCONS_00038834 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038834
Unique NameTCONS_00038834
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038834 ID=TCONS_00038834|Name=TCONS_00038834|organism=Clytia hemisphaerica|type=transcript|length=649bp
GCAGTGTGCAATCCAGTTGTATTGCTGATTTTGAAGGTACTTAGAAAGCG
AAGGCCGGTCGATAAGGTTTTTGATTTGCTCATTTGAGTAAAGTAGTTTT
TTGAATGTTCCTTTTTTTCCATCATTTGTTGTATATTCAATCAGTTCAGG
TTTGCGTTGATTACCTCCTCTGACTAGGTAACGTAAGAATTGGGTATATT
GACTCTCAATATGATCGAATTGTTTCTTGGTCAATGTCCAGCACTGACAT
CCATACATGAGACGGGAGCGAACAAGTGATTCGAGGTATAGAACTCTGGT
GTGAAGTTTGATTTTATAATTCGtgaaaaaaggtttcaattCGTAAAATT
TGCAATTGGCTGAAGTGATGCGATGCTCTATTTCAATATCTCCTGTTGAA
CTGTTGTCATGTTCGATAAATGCTCCCAGGTATTTGAATGATTTTGAGTT
TCTAATTGGGATCCCATTCAAGGTTATAATTGACTGTGGATATATGTCAT
TTATAGTTGGTTTTCCTAATTTCCAGTTTAGAATAAGGGTTTCGGTTTTA
TCCGGATTGAGTTTTAGACAGTATTCAACAAATACTTCGTTCAATATCTC
aatcattttctcgAGATCTCCAATGCACCAAGCTGCTAGGACAATGTCG
Run BLAST on NCBI

protein sequence of TCONS_00038834-protein

>TCONS_00038834-protein ID=TCONS_00038834-protein|Name=TCONS_00038834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
DIVLAAWCIGDLEKMIEILNEVFVEYCLKLNPDKTETLILNWKLGKPTIN
DIYPQSIITLNGIPIRNSKSFKYLGAFIEHDNSSTGDIEIEHRITSANCK
FYELKPFFTNYKIKLHTRVLYLESLVRSRLMYGCQCWTLTKKQFDHIESQ
YTQFLRYLVRGGNQRKPELIEYTTNDGKKGTFKKLLYSNEQIKNLIDRPS
LSKYLQNQQYNWIAHC
Run BLAST on NCBI

transcript from alignment at sc0001943:27020..27668

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038834 ID=TCONS_00038834|Name=TCONS_00038834|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at sc0001943:27020..27668 (Clytia hemisphaerica)
CGACATTGTCCTAGCAGCTTGGTGCATTGGAGATCTcgagaaaatgattG
AGATATTGAACGAAGTATTTGTTGAATACTGTCTAAAACTCAATCCGGAT
AAAACCGAAACCCTTATTCTAAACTGGAAATTAGGAAAACCAACTATAAA
TGACATATATCCACAGTCAATTATAACCTTGAATGGGATCCCAATTAGAA
ACTCAAAATCATTCAAATACCTGGGAGCATTTATCGAACATGACAACAGT
TCAACAGGAGATATTGAAATAGAGCATCGCATCACTTCAGCCAATTGCAA
ATTTTACGaattgaaaccttttttcaCGAATTATAAAATCAAACTTCACA
CCAGAGTTCTATACCTCGAATCACTTGTTCGCTCCCGTCTCATGTATGGA
TGTCAGTGCTGGACATTGACCAAGAAACAATTCGATCATATTGAGAGTCA
ATATACCCAATTCTTACGTTACCTAGTCAGAGGAGGTAATCAACGCAAAC
CTGAACTGATTGAATATACAACAAATGATGGAAAAAAAGGAACATTCAAA
AAACTACTTTACTCAAATGAGCAAATCAAAAACCTTATCGACCGGCCTTC
GCTTTCTAAGTACCTTCAAAATCAGCAATACAACTGGATTGCACACTGC

Coding sequence (CDS) from alignment at sc0001943:27020..27668

>TCONS_00038834 ID=TCONS_00038834|Name=TCONS_00038834|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0001943:27020..27668 (Clytia hemisphaerica)
GACATTGTCCTAGCAGCTTGGTGCATTGGAGATCTcgagaaaatgattGA
GATATTGAACGAAGTATTTGTTGAATACTGTCTAAAACTCAATCCGGATA
AAACCGAAACCCTTATTCTAAACTGGAAATTAGGAAAACCAACTATAAAT
GACATATATCCACAGTCAATTATAACCTTGAATGGGATCCCAATTAGAAA
CTCAAAATCATTCAAATACCTGGGAGCATTTATCGAACATGACAACAGTT
CAACAGGAGATATTGAAATAGAGCATCGCATCACTTCAGCCAATTGCAAA
TTTTACGaattgaaaccttttttcaCGAATTATAAAATCAAACTTCACAC
CAGAGTTCTATACCTCGAATCACTTGTTCGCTCCCGTCTCATGTATGGAT
GTCAGTGCTGGACATTGACCAAGAAACAATTCGATCATATTGAGAGTCAA
TATACCCAATTCTTACGTTACCTAGTCAGAGGAGGTAATCAACGCAAACC
TGAACTGATTGAATATACAACAAATGATGGAAAAAAAGGAACATTCAAAA
AACTACTTTACTCAAATGAGCAAATCAAAAACCTTATCGACCGGCCTTCG
CTTTCTAAGTACCTTCAAAATCAGCAATACAACTGGATTGCACACTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023315XLOC_023315Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038834-exon-sc0001943-1491911889:27020..27668TCONS_00038834-exon-sc0001943-1491911889:27020..27668Clytia hemisphaericaexon
TCONS_00038834-exon-sc0001943-1510915933:27020..27668TCONS_00038834-exon-sc0001943-1510915933:27020..27668Clytia hemisphaericaexon
TCONS_00038834-exon-sc0001943-1575043694:27020..27668TCONS_00038834-exon-sc0001943-1575043694:27020..27668Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038834-proteinTCONS_00038834-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001943supercontigsc0001943:27020..27668 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.322525	0.157256	0.18259	0.178635	0.652414	0.687395	0.310993	0.776393	0.0705872	0.504975	0	0.2685	0.429002	0.501214	0.320496	0.44221	0.121059	0.0620409	0	0.358769	0.311835	0.228154	0	0.168101	0.432851	1.54524	0.110561	0.117994	0.0894944	0.0911806
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038834 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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